Sequence
atgc intronic sequence ATGC exonic sequenceGCCAATGATGCACAGCTTAGTACGATGGTTGCCGAACAGgtaattttttcttttttaattaactaaatatcaactgtttagatggtggttgcatatgaatggtttttataaatctattgttgcctcttcccccttacca...
Basic information
species | Glycine max |
transcript | GLYMA03G03120.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G03120.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv03s0097g00670.t01 (Vitis vinifera), 5'ss of exon 2
GCCAATGATGCACAGCTTAGTACGATGGTTGCCGAACAGgta-attttttcttttttaattaactaaatatcaactgtttagatgg--tggttgcatatgaatggtttttataaatctattgttgcct-cttcccccttacca-----------------------------------------------------------------------------------
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GCAAATGATGCACAACTTAGTACGATGGTTGCAGAGCAGgtatacagaaacttatattctaagcttcagggaaattattatgttgtattaattttatgtggatg-ctgttatgtctcttatgttcttcacttttttctgatgagtctacggtgctgaagaatcctgggcaccttaattgtattaccatatcgatgtgttctaatgaaatgttactcttgaattcag
upper sequence: GLYMA03G03120.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv12s0034g02360.t01 (Vitis vinifera), 5'ss of exon 2
GCCAATGATGCACAGCTTAGTACGATGGTTGCCGAACAGgta----attttttcttttttaattaactaaatatcaactgtttagatggtggttgcatatgaatggtttttataaatctattgttgcctcttcccccttacca-----------------------------------------------------------------------------------
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GCAAATGATGCACAACTTAGTACGATGGTTGCAGAGCAGgtatagagaaacttctattctaagcttcagggaaattattatgttgttattaatgttatgtggata-ctattatgtctcttatgtt-cttcactttttttatgagtctatggtgctgaagaatcccaggcactttaattttactacgatattgatgtgttctattgaaacaaaactcttaaattcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209707340|gb|BW670619.1|BW670619EST: GCCAATGATGCACAGCTTAGTACAATGGTTGCCGAACAG GTTGAGCAGTCACAGGCAGGACTAAAATCACTCTCCTTCTCTGAGAGGACA
genomic: GCCAATGATGCACAGCTTAGTACGATGGTTGCCGAACAGgtaatttttt ... acttctgcagGTTGAGCAGTCACAGGCAGGACTAAAATCACTCTCCTTCTCTGAGAGGACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCCAATGATGCACAGCTTAGTACGATGGTTGCCGAACAGgtaattttttcttttttaattaactaaatatcaactgtttagatggtggttgcatatgaatggtttttataaatctattgttgcctcttcccccttacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttccccc