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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCAATGATGCACAGCTTAGTACGATGGTTGCCGAACAGgtaattttttcttttttaattaactaaatatcaactgtttagatggtggttgcatatgaatggtttttataaatctattgttgcctcttcccccttacca...

Basic information

species Glycine max
transcript GLYMA03G03120.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G03120.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv03s0097g00670.t01 (Vitis vinifera), 5'ss of exon 2
GCCAATGATGCACAGCTTAGTACGATGGTTGCCGAACAGgta-attttttcttttttaattaactaaatatcaactgtttagatgg--tggttgcatatgaatggtttttataaatctattgttgcct-cttcccccttacca-----------------------------------------------------------------------------------
|| ||||||||||| ||||||||||||||||| || |||||| |      ||| | |  | | ||  |    || | ||  | ||   |  ||  || || |||  | ||||   |||  ||||     |||    || |  |                                                                                   
GCAAATGATGCACAACTTAGTACGATGGTTGCAGAGCAGgtatacagaaacttatattctaagcttcagggaaattattatgttgtattaattttatgtggatg-ctgttatgtctcttatgttcttcacttttttctgatgagtctacggtgctgaagaatcctgggcaccttaattgtattaccatatcgatgtgttctaatgaaatgttactcttgaattcag

upper sequence: GLYMA03G03120.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv12s0034g02360.t01 (Vitis vinifera), 5'ss of exon 2
GCCAATGATGCACAGCTTAGTACGATGGTTGCCGAACAGgta----attttttcttttttaattaactaaatatcaactgtttagatggtggttgcatatgaatggtttttataaatctattgttgcctcttcccccttacca-----------------------------------------------------------------------------------
|| ||||||||||| ||||||||||||||||| || ||||||         |||| || |||    |     |   | | | | | |  |  |   || || ||   | ||||   |||  |||| | ||       |||  |                                                                                   
GCAAATGATGCACAACTTAGTACGATGGTTGCAGAGCAGgtatagagaaacttctattctaagcttcagggaaattattatgttgttattaatgttatgtggata-ctattatgtctcttatgtt-cttcactttttttatgagtctatggtgctgaagaatcccaggcactttaattttactacgatattgatgtgttctattgaaacaaaactcttaaattcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209707340|gb|BW670619.1|BW670619
EST:     GCCAATGATGCACAGCTTAGTACAATGGTTGCCGAACAG                         GTTGAGCAGTCACAGGCAGGACTAAAATCACTCTCCTTCTCTGAGAGGACA
genomic: GCCAATGATGCACAGCTTAGTACGATGGTTGCCGAACAGgtaatttttt ... acttctgcagGTTGAGCAGTCACAGGCAGGACTAAAATCACTCTCCTTCTCTGAGAGGACA