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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAAAGAAGTTGCTCCGGCTGCAAGGAGAAGAAACGCCAAACTCTCCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatcttctctctctgcttagggtttgttgccatcactttttttgtttttttttccctggctttgtatgcataataataataataataataacaa...

Basic information

species Glycine max
transcript GLYMA03G02240.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193644677|gb|FK589121.1|FK589121
EST:     AACGGCCGTTTCAAAGTTCAAGAG                         GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
genomic: AACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: gi|207805526|gb|GD776449.1|GD776449
EST:     CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG                         GTGGGCAAGACA
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACA
EST: gi|208074055|gb|GD867804.1|GD867804
EST:     CGGCCGTTTCAAAGTTCAAGAG                         GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
genomic: CGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: gi|193532858|gb|FK493280.1|FK493280
EST:     TTTCAAAGTTCAAGAG                         GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
genomic: TTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: gi|208337807|gb|GE135203.1|GE135203
EST:     CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG                         GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: gi|208205857|gb|GE006198.1|GE006198
EST:     CGGCCG-TTCAAAGTTCAAGAG                         GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
genomic: CGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: gi|58020613|gb|CX707355.1|CX707355
EST:     CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG                         GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: gi|22929929|gb|BU547068.1|BU547068
EST:     CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG                         GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: gi|31467784|gb|CD409812.1|CD409812
EST:     CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG                         GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: gi|213604465|gb|DB978253.1|DB978253
EST:     CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG                         GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: gi|193512610|gb|FK471810.1|FK471810
EST:     CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG                         GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: gi|209707164|gb|BW656781.1|BW656781
EST:     CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG                         GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: gi|7234436|gb|AW569773.1|AW569773
EST:     CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG                         GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: gi|208272691|gb|GE067093.1|GE067093
EST:     CGGCCGTTTCAAAGTTCAAGAG                         GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
genomic: CGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: gi|192317009|gb|FK010912.1|FK010912
EST:     CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG                         GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: gi|208113662|gb|GD911189.1|GD911189
EST:     AAAACGGCCGTTTCAAAGTTCAAGAG                         GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
genomic: AAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: gi|213603370|gb|DB981971.1|DB981971
EST:     AAAAACGGCCGTTTCAAAGTTCAAGAG                         GTGGGCAAGACA-AATCTTCATGGAAATGGAAGATTAGATGATGGCAAGGC
genomic: AAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTT-ATGGAAATGGAAGATTAGATGATGGCAAGGC
EST: gi|193720076|gb|FK650488.1|FK650488
EST:     CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG                         GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: gi|192317010|gb|FK010913.1|FK010913
EST:     CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG                         GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: gi|31475122|gb|CD417150.1|CD417150
EST:     CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG                         GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: gi|208320939|gb|GE123388.1|GE123388
EST:     CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG                         GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: gi|208205417|gb|GE005324.1|GE005324
EST:     GCCGTTTCAAAGTTCAAGAG                         GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
genomic: GCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: gi|31310301|gb|CD395504.1|CD395504
EST:     CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG                         GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: gi|192314096|gb|FK011132.1|FK011132
EST:     CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG                         GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: gi|213593874|gb|DB983138.1|DB983138
EST:     CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG                         GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: gi|192328075|gb|FK020378.1|FK020378
EST:     CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG                         GTGGGCAAGACATTATCTTATGGAGATGGAAGATTAGATGATGGCAAGGCT
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: gi|209713909|gb|BW681914.1|BW681914
EST:     CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG                         GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: gi|208256816|gb|GE051345.1|GE051345
EST:     CGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG                         GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
genomic: CGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: gi|151395245|gb|EV265116.1|EV265116
EST:     CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGCTCAAGAG                         GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: gi|209717514|gb|BW653954.1|BW653954
EST:     CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG                         T
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaag-
EST: gi|209717514|gb|BW653954.1|BW653954
EST:     CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG                         T
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaag-
EST: gi|209704041|gb|BW673641.1|BW673641
EST:     CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG                         GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: gi|207763999|gb|GD738864.1|GD738864
EST:     AAAACGGCCGTTTCAAAGTTCAAGAG                         GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
genomic: AAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: gi|58016323|gb|CX703065.1|CX703065
EST:     CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG                         GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: gi|208138618|gb|GD939750.1|GD939750
EST:     CTTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG                         GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
genomic: C-TTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
EST: gi|193485833|gb|FK451222.1|FK451222
EST:     CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAG                         GTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT
genomic: CCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatc ... gttcatgaagGTGGGCAAGACATTATCTTATGGAAATGGAAGATTAGATGATGGCAAGGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCAAAGAAGTTGCTCCGGCTGCAAGGAGAAGAAACGCCAAACTCTCCTTCGCCTTTGTATTCCCCGACAAAAACGGCCGTTTCAAAGTTCAAGAGgtaatcgatcttctctctctgcttagggtttgttgccatcactttttttgtttttttttccctggctttgtatgcataataataataataataataacaa

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