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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTTGTTGCCATGCTTGGTACTCGCAGACTCCCATTTCCTGCATTTGGCTTTGACTTAGTCCATTGTTCTCGGTGTTTAATCCCTTTTACAGCCTACAgtaagttcttcatcactgccgacctttgcatatcttgcaaacttctaaatcgaaataacttccctaatgcagaaaccttgccttgcag

Basic information

species Glycine max
transcript GLYMA03G01870.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G01870.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G076841_T01 (Zea mays), 5'ss of exon 3
GCTTTTGTTGCCATGCTTGGTACTCGCAGACTCCCATTTCCTGCATTTGGCTTTGACTTAGTCCATTGTTCTCGGTGTTTAATCCCTTTTACAGCCTACAgtaagt--tcttcatcactgccgacctttgcatatcttgcaaacttctaaatcgaaataact-tccctaatgcagaaaccttgccttgcag
|| ||| ||   ||| | || |||||| | || || ||||| |||     |||||| || ||||||||||| |||||||| || |||||||| ||||| |||||||  | | | ||     | | |  |  |   |||| | |  |  | |      || |   | || ||    | ||  ||    ||||
GCATTTCTTTTGATGTTGGGCACTCGCCGTCTTCCTTTTCCAGCACAGTCCTTTGATTTTGTCCATTGTTCCCGGTGTTTGATACCTTTTACTGCCTATAgtaagtaatttccttcttctgcaaaccataaactgcttggacatatacacacttttctaccagcctctgatttgtacacactg----gcag

upper sequence: GLYMA03G01870.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G00740.1 (Arabidopsis thaliana), 5'ss of exon 3
GCTTTTGTTGCCATGCTTGGTACTCGCAGACTCCCATTTCCTGCATTTGGCTTTGACTTAGTCCATTGTTCTCGGTGTTTAATCCCTTTTACAGCCTACAgtaagttcttc-----atcactgccgacctttgcatatcttgcaaacttctaaatcgaaataacttccctaatgcagaaaccttgccttgcag
|| ||||||||||||||||| ||||| |||||||| ||||||||||    ||||||| |  | || ||||| || ||||| || |||||||| || |||||| ||| | |      ||      | || | || |  | |       || | |   | ||| | |    |  ||        ||    |||||
GCATTTGTTGCCATGCTTGGCACTCGTAGACTCCCCTTTCCTGCATACTCCTTTGACCTGATGCACTGTTCCCGATGTTTGATTCCTTTTACGGCTTACAgtgagtcccttgggttatatacctctacttatgtacgtgtgttgcggtttttagcagcaattattcttattgtgtttggtgatttgtctgcag

upper sequence: GLYMA03G01870.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv15s0048g01990.t01 (Vitis vinifera), 5'ss of exon 3
GCTTTTGTTGCCATGCTTGGTACTCGCAGACTCCCATTTCCTGCATTTGGCTTTGACTTAGTCCATTGTTCTCGGTGTTTAATCCCTTTTACAGCCTACAgtaagttcttcat-cactgccgacctttgcat--atcttgcaaacttctaaatcgaaataacttccctaatgcagaaaccttgccttgcag
||  |||| || |||||||| ||||| ||||| ||||||||||||||    |||||||| || || || ||||| ||||| ||||||||||| || || ||| ||||||  || || ||  |   ||   ||  |   | |  |||| |    | |  |    ||  ||||  |     || |  ||||||
GCACTTGTGGCAATGCTTGGCACTCGTAGACTGCCATTTCCTGCATTCTCATTTGACTTGGTGCACTGCTCTCGATGTTTGATCCCTTTTACCGCTTATAgtgagttctatatgcaatgtggctattgaaatttacacttcttacttgtcctcctacttg--ctctgtaataaaatgttctggatttgcag