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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTCCAAATGTTGTTTATAAAGGAAAGTTGGAGAATCAAATGAGGATTGCTGTTAAGCGGTTTAATAGGAATGCTTGGCCTGATGCTCGGCAGTTTTTGgtaaattcacccgccccaattggtttcttcttcaaccttgctcttaactatcaattctcctgtagacctgttcatgaccttgcattgcacagatgcatta...

Basic information

species Glycine max
transcript GLYMA03G01300.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G01300.2 (Glycine max), 5'ss of exon 3
lower sequence: AT4G00710.1 (Arabidopsis thaliana), 5'ss of exon 3
GGCTCCAAATGTTGTTTATAAAGGAAAGTTGGAGAATCAAATGAGGATTGCTGTTAAGCGGTTTAATAGGAATGCTTGGCCTGATGCTCGGCAGTTTTTGgtaaattcac-ccgccccaattggtttcttcttcaaccttgctcttaactatcaattctcctgtagacctgttcatgaccttgcattgcacagatgcatta
||||||||||||||| |||||||| || |||||||| |||| || ||||||||| ||||| |||| ||| |  || ||||||||| | || ||||| ||||||  |||    |     || | ||   || ||  | ||  || || | | | |    |  ||   |  ||||| |     | | |||  |||        
GGCTCCAAATGTTGTCTATAAAGGGAAATTGGAGAACCAAAAGAAGATTGCTGTCAAGCGTTTTACTAGAATGGCCTGGCCTGATTCACGACAGTTCTTGgtatgttcttatctttggaaattgtagtttgtttcatct--ctttttattttga----tgttgagaatgtgttctt----cttccttgtgcag--------

upper sequence: GLYMA03G01300.2 (Glycine max), 5'ss of exon 3
lower sequence: AT1G01740.1 (Arabidopsis thaliana), 5'ss of exon 3
GGCTCCAAATGTTGTTTATAAAGGAAAGTTGGAGAATCAAATGAGGATTGCTGTTAAGCGGTTTAATAGGAATGCTTGGCCTGATGCTCGGCAGTTTTTGgta-aattcacccgccccaattggtttcttcttcaaccttgctcttaactatcaattctcctgtagacctgttcatgaccttgcattgcacagatgcatta
 |||||||||||||| ||| |||| || ||||||||||| |||| ||||||| | ||||| |||  | | | ||| ||||||||| |||| || ||  |||||         |    || ||  | |  |   |||     |||  | |||| || | |    ||   |||||                            
AGCTCCAAATGTTGTCTATCAAGGGAAATTGGAGAATCATATGAAGATTGCTATCAAGCGCTTTTCTGGAACTGCCTGGCCTGATCCTCGCCAATTCCTGgtatggcatgtacctttcagtttatctagttgccaatt---ctcaaatctattaactttgg-atatgtctgtttccag-----------------------