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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAGgtatattcagaatccattgacttcacccttatgttttttctaacttatgtgcattattttttgtcttctcccttgattatttggttttcggtctaaaatatgcatacattag

Basic information

species Glycine max
transcript GLYMA03G00920.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G00920.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g59930.1 (Oryza sativa), 5'ss of exon 3
GGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAGgtatattcagaatccattgacttcacccttatgt-tttttctaacttatgtgcattattttttgtcttctcccttgattatttggttttcggtctaaaatatg-catacattag
 ||  ||||||||  ||| ||||| || |||||||| ||||| |||||||| |||||||| ||| | || |||||||| || |||||||||||| |||  | || || |   ||   |  ||||  |  || |   | |        |  | | ||  | | ||          | ||| |  | |||  | |  ||||    ||
AGGACAAGATGCTACAGGCGAAGAAGTAATCAAACCTTATACCCCTACTACATTGGATTCTGATCTAGGGCATTTTGAGCTTGTTATTAAGgtaaatt--gtattcagttctttatactgtatgaatgcttgtttgtcaatcctggaacatatcgttatgtgccacacaagcaggatttgccatttaacttttctcataatgcag

upper sequence: GLYMA03G00920.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0056g01150.t01 (Vitis vinifera), 5'ss of exon 3
GGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAGgtatattcagaatccattgact--tcacccttatgttttttctaacttatgtgcattatt-ttttgtcttctcccttgattatttggttttcggtcta-aaatatgcatacattag
|||||| |||| | | ||| ||||  |||||||||||||||| || ||||| |||||||| ||||||||| |||||||||| ||||| ||||| | |     || | |  | |  |   | |  |  ||    | | |||| |   |  || | |  | |    |  ||  |  |  || ||    ||  |||||            
GGGTAAGGATGGTGAGGGTCAAGAAATTATCAAACCATATACCCCAACTACATTGGATTCTGATGTTGGATATTTTGAACTTGTTATAAAGgtttgtatctgattcttatattattggacttcgtaattggctttatttatttatttatttgtctcatttaaatctgtgtctgctatgtgtttttcctgtaaatag-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192301598|gb|FG994782.1|FG994782
EST:     CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAG                         ATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
genomic: CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAGgtatattcag ... catacattagATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
EST: gi|213587981|gb|DB971456.1|DB971456
EST:     CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAG                         ATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
genomic: CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAGgtatattcag ... catacattagATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
EST: gi|213617616|gb|DB969328.1|DB969328
EST:     CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAG                         ATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
genomic: CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAGgtatattcag ... catacattagATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
EST: gi|209728695|gb|BW655402.1|BW655402
EST:     CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAG                         ATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
genomic: CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAGgtatattcag ... catacattagATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
EST: gi|151407227|gb|EV277042.1|EV277042
EST:     CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAG                         ATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
genomic: CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAGgtatattcag ... catacattagATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
EST: gi|10236160|gb|BE805048.1|BE805048
EST:     CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAG                         ATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
genomic: CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAGgtatattcag ... catacattagATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
EST: gi|151394787|gb|EV264658.1|EV264658
EST:     CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAG                         ATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
genomic: CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAGgtatattcag ... catacattagATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
EST: gi|13251953|gb|BG362856.1|BG362856
EST:     TTTTGAACTAGTTATTAAG                         ATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
genomic: TTTTGAACTAGTTATTAAGgtatattcag ... catacattagATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
EST: gi|58021619|gb|CX708360.1|CX708360
EST:     CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAG                         ATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
genomic: CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAGgtatattcag ... catacattagATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
EST: gi|298183643|gb|HO028856.1|HO028856
EST:     CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAG                         ATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
genomic: CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAGgtatattcag ... catacattagATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
EST: gi|151401464|gb|EV271278.1|EV271278
EST:     CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAATTATTAAG                         ATGTACCCACAAGGAAAGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
genomic: CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAGgtatattcag ... catacattagATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
EST: gi|193418380|gb|FK385180.1|FK385180
EST:     CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAG                         ATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
genomic: CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAGgtatattcag ... catacattagATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
EST: gi|298174935|gb|HO014852.1|HO014852
EST:     CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAG                         ATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
genomic: CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAGgtatattcag ... catacattagATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
EST: gi|151403993|gb|EV273803.1|EV273803
EST:     CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAG                         ATGTACCCACAGGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
genomic: CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAGgtatattcag ... catacattagATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
EST: gi|298189804|gb|HO038207.1|HO038207
EST:     CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAG                         ATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
genomic: CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAGgtatattcag ... catacattagATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
EST: gi|13788917|gb|BG651508.1|BG651508
EST:     CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAG                         ATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
genomic: CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAGgtatattcag ... catacattagATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
EST: gi|37995436|gb|CF807025.1|CF807025
EST:     CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAG                         ATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
genomic: CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAGgtatattcag ... catacattagATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
EST: gi|18690778|gb|BM519626.1|BM519626
EST:     CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAG                         ATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
genomic: CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAGgtatattcag ... catacattagATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
EST: gi|298186113|gb|HO036746.1|HO036746
EST:     CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAG                         ATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
genomic: CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAGgtatattcag ... catacattagATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
EST: gi|151399348|gb|EV269219.1|EV269219
EST:     CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAG                         ATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
genomic: CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAGgtatattcag ... catacattagATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT
EST: gi|298178943|gb|HO024678.1|HO024678
EST:     CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAG                         ATGTACCCACAAGGAAGGATGTCACACCATTTCTGTGAGATGCGTGTTGGT
genomic: CTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAGgtatattcag ... catacattagATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGT