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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACATGAAAGCTGGGGTGGAGTATGTCCGGCATGTTTCATCACTTGTGAAAAATGGCATAAATTCTATGAAGGCAGCCTCCTTCTCATTGGCAGCCGAAGgttcgtttatctgaaggtttcagcaactctttcattttatagtttagaaatctttttgatcttgatatgagacttgtattagactgaaacagttacatat...

Basic information

species Glycine max
transcript GLYMA02G47930.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G47930.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv12s0057g01510.t01 (Vitis vinifera), 5'ss of exon 4
TACATGAAAGCTGGGGTGGAGTATGTCCGGCATGTTTCATCACTTGTGAAAAATGGCATAAATTCTATGAAGGCAGCCTCCTTCTCATTGGCAGCCGAAGgttc--gtttatct---gaaggtttcagcaactctttcattttatagtttagaaatctttttgatcttgatatgagacttgtattagactgaaacagttacatat
||  || |||| ||||  ||||||||||| ||||||||||||||| ||||||  ||||| |||||| |      | |||| | |||| || || | ||||||||  |||  |||   |||  |||  |  |    || | |||    |  | |      |   || |||   ||       | ||    || ||   |  ||   
TATGTGCAAGCGGGGGCAGAGTATGTCCGACATGTTTCATCACTTATGAAAACCGGCATCAATTCTCTTCTACTAACCTCATCCTCAGTGACATCAGAAGgttcaggttcgtcttcagaaaatttttgggatctgtttagtttcagatacatatg---gtgcaattttgtggtgcagagaattttctggtgcaattttgtcac--