Sequence
atgc intronic sequence ATGC exonic sequenceGGAGATTCTACAAATGCTGACCCTGCAAAAGCAAATGAAGAGGCAAAAAATAATGATCAGGCTAGGCAAGACAAACCTGCAGATAAAACAGAGGAATCAGgttctatttcagattctcaatctcaaactgtcaaaagaaggaggagaggttttaaacgaactgcattttctgattcag
Basic information
species | Glycine max |
transcript | GLYMA02G46390.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G46390.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os08g25090.2 (Oryza sativa), 5'ss of exon 2
GGAGATTCTACAAATGCTGACCCTGCA-AAAGCAAATGAAGAGGCAAAAAATAATGATCAGGCTAGGCAAGACAAACCTGCAGATAAAACAGAGGAATCAGgttctatttc---agattctcaatctcaaactgtcaaaagaaggaggagaggttttaaacgaactgcattttctgattcag
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-------GCAAATAAACAGACAGAGGATGGAGTTAATAAAAGCACTCAATCTGAAGCTTCAAATGAAACCAATAGTTCTCCTGGAACCGAGAATGCATCTCAAGCAGgttcacaagattctgtgccccaatct---aacaggaggaggagaggtactaaacgaactgcattttctgattcag
upper sequence: GLYMA02G46390.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G002440_T02 (Zea mays), 5'ss of exon 2
GGAGATTCTACAAATGCTGACCCTGCAAAAGCAAATGAAGAGGCAAAAAATAATGAT-CAGGCTAGGCAAG--ACAAACCTGCA---GATAAAACAGAGGAATCAGgttctatttcagattctcaatctcaaactgtcaaaagaaggaggagaggttttaaacgaactgcattttctgattcag
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---AAGCACACAGATGATGGGGTT---AATAGAAGTGTTGGAGCAAGTACTGGAGCTTCAAGTGAAGCCAATAATGTGCCTGGAACCGAGAAGGCACAGGAAGCAGgttcactt---gattctatatccaagtct---aacaggaagaggacag---ctaaacgaactgcattttctgattcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51345112|gb|CO985845.1|CO985845EST: TAATGATCAGGCTAGGCAAGACAAANNNGCAGATAAAACAGAGGAATCAG ATTCAGAAAGTGAATGTGACCTATCCAGGGATGATTTAATTAAACTTGTGG
genomic: TAATGATCAGGCTAGGCAAGACAAACCTGCAGATAAAACAGAGGAATCAGgttctatttc ... tctgattcagATTCAGAAAGTGAATGTGACCTATCCAGGGATGATTTAATTAAACTTGTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAGATTCTACAAATGCTGACCCTGCAAAAGCAAATGAAGAGGCAAAAAATAATGATCAGGCTAGGCAAGACAAACCTGCAGATAAAACAGAGGAATCAGgttctatttcagattctcaatctcaaactgtcaaaagaaggaggagaggttttaaacgaactgcattttctgattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA