1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
AGTATTCGCCCTGCCTTCTCCGCAATCAGACACTTGTCTTCTGCAGCTAAAGAGgtatgtattattgttctcatctctaatctcttcatctcttactatcaaatatcaaactggccattgttgtttcgatgcag
species | Glycine max |
transcript | GLYMA02G46380.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTCGCCCTGCCTTCTCCGCAATCAGACACTTGTCTTCTGCAGCTAAAGAG ATTACTGTCAGGGAGGCTCTGAACTCCGCACTCGATGAGGAAATGTCAGCTEST: gi|4292147|gb|AI441863.1|AI441863
genomic: TTCGCCCTGCCTTCTCCGCAATCAGACACTTGTCTTCTGCAGCTAAAGAGgtatgtatta ... ttcgatgcagATTACTGTCAGGGAGGCTCTGAACTCCGCACTCGATGAGGAAATGTCAGCT
EST: CCTGCCTTCTCCGCAATCAGACACTTGTCTTCTGCAGCTAAAGAG ATTACTGTCAGGGAGGCTCTGAACTCCGCACTCGATGAGGAAATGTCAGCTEST: gi|192295237|gb|FG986956.1|FG986956
genomic: CCTGCCTTCTCCGCAATCAGACACTTGTCTTCTGCAGCTAAAGAGgtatgtatta ... ttcgatgcagATTACTGTCAGGGAGGCTCTGAACTCCGCACTCGATGAGGAAATGTCAGCT
EST: TTCGCCCTGCCTTCTCCGCAATCAGACACTTGTCTTCTGCAGCTAAAGAG ATTACTGTCAGGGAGGCTCTGAACTCCGCACTCGATGAGGAAATGTCAGCTEST: gi|298167466|gb|HO012729.1|HO012729
genomic: TTCGCCCTGCCTTCTCCGCAATCAGACACTTGTCTTCTGCAGCTAAAGAGgtatgtatta ... ttcgatgcagATTACTGTCAGGGAGGCTCTGAACTCCGCACTCGATGAGGAAATGTCAGCT
EST: TTCGCCCTGCCTTCTCCGCAATCAGACACTTGTCTTCTGCAGCTAAAGAG ATTACTGTCAGGGAGGCTCTGAACTCCGCACTCGATGAGGAAATGTCAGCTEST: gi|207806334|gb|GD778811.1|GD778811
genomic: TTCGCCCTGCCTTCTCCGCAATCAGACACTTGTCTTCTGCAGCTAAAGAGgtatgtatta ... ttcgatgcagATTACTGTCAGGGAGGCTCTGAACTCCGCACTCGATGAGGAAATGTCAGCT
EST: TTCGCCCTGCCTTCTCCGCAATCAGACACTTGTCTTCTGCAGCTAAAGAG ATTACTGTCAGGGAGGCTCTGAEST: gi|213594578|gb|DB957997.1|DB957997
genomic: TTCGCCCTGCCTTCTCCGCAATCAGACACTTGTCTTCTGCAGCTAAAGAGgtatgtatta ... ttcgatgcagATTACTGTCAGGGAGGCTCTGA
EST: TTCGCCCTGCCTTCTCCGCAATCAGACACTTGTCTTCTGCAGCTAAAGAG ATTACTGTCAGGGAGGCTCTGAACTCCGTACTCGATGAGGAAATGTCAGCTEST: gi|193598561|gb|FK554615.1|FK554615
genomic: TTCGCCCTGCCTTCTCCGCAATCAGACACTTGTCTTCTGCAGCTAAAGAGgtatgtatta ... ttcgatgcagATTACTGTCAGGGAGGCTCTGAACTCCGCACTCGATGAGGAAATGTCAGCT
EST: TTCGCCCTGCCTTCTCCGCAATCAGACACTTGTCTTCTGCAGCTAAAGAG ATTACTGTCAGGGAGGCTCTGAACTCCGCACTCGATGAGGAAATGTCAGEST: gi|208318519|gb|GE113744.1|GE113744
genomic: TTCGCCCTGCCTTCTCCGCAATCAGACACTTGTCTTCTGCAGCTAAAGAGgtatgtatta ... ttcgatgcagATTACTGTCAGGGAGGCTCTGAACTCCGCACTCGATGAGGAAATGTCAG
EST: TTCGCCCTGCCTTCTCCGCAATCAGACACTTGTCTTCTGCAGCTAAAGAG ATTACTGTCAGGGAGGCTCTGAACTCCGCACTCGATGAGGAAATGTCAGEST: gi|7147468|gb|AW509390.1|AW509390
genomic: TTCGCCCTGCCTTCTCCGCAATCAGACACTTGTCTTCTGCAGCTAAAGAGgtatgtatta ... ttcgatgcagATTACTGTCAGGGAGGCTCTGAACTCCGCACTCGATGAGGAAATGTCAG
EST: TTCGCCCTGCCTTCTCCGCAATCAGACACTAGTCTTCTGCAGCTAAAGAG ATTACTGTCAGGGAGGCTCTGAACTCCGCACTCGATGAGGAAATG
genomic: TTCGCCCTGCCTTCTCCGCAATCAGACACTTGTCTTCTGCAGCTAAAGAGgtatgtatta ... ttcgatgcagATTACTGTCAGGGAGGCTCTGAACTCCGCACTCGATGAGGAAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTATTCGCCCTGCCTTCTCCGCAATCAGACACTTGTCTTCTGCAGCTAAAGAGgtatgtattattgttctcatctctaatctcttcatctcttactatcaaatatcaaactggccattgttgtttcgatgcag
- - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - GCAGCT