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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGGGCTATTGCAGATTCAAAGCGACAAGGATATCTTGGTTTCACTGAATTTATCATTGCTATGCAGgtaaaaatatgtcatgctttttttgaacttcaatgctgataaatttccaaaatcttacacatctgaaatgtag

Basic information

species Glycine max
transcript GLYMA02G46350.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G46350.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G20290.2 (Arabidopsis thaliana), 5'ss of exon 3
GTGTGGGCTATTGCAGATTCAAAGCGACAAGGATATCTTGGTTTCACTGAATTTATCATTGCTATGCAGgtaaaaatatgtcatgctttt----tttgaacttcaatgct--gataaatttccaaaatcttacacatctgaaatgtag---
 | ||||||||||||||||||||| ||||||| |||||||||||||  || |||||  |||| ||||||||  | ||      |   | |    |||  |  || |||    | |     || ||  | ||     | |  ||  |     
ATCTGGGCTATTGCAGATTCAAAGAGACAAGGGTATCTTGGTTTCAAAGAGTTTATTGTTGCCATGCAGgtttagatccagtttatatctcacatttatatgtccatgtctcgctgtgaatctaatgtgttgttattttccaacattatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193396717|gb|FK362289.1|FK362289
EST:     CAAAGCGACAAGGATATCTTGGTTTCACTGAATTTATCATTGCTATGCAG                         CTAGTTTCTTTGGCTCAATCTGGGCACTCAATAACACCCGATCTGCTGACT
genomic: CAAAGCGACAAGGATATCTTGGTTTCACTGAATTTATCATTGCTATGCAGgtaaaaatat ... tgaaatgtagCTAGTTTCTTTGGCTCAATCTGGGCACTCAATAACACCCGATCTGCTGACT
EST: gi|17518867|gb|BM187909.1|BM187909
EST:     CAAAGCGACAAGGATATCTTGGTTTCACTGAATTTATCATTGCTATGCAG                         CTAGTTTCTTTGGCTCAATCTGGGCACTCAATAACACCCGATCTGCTGACT
genomic: CAAAGCGACAAGGATATCTTGGTTTCACTGAATTTATCATTGCTATGCAGgtaaaaatat ... tgaaatgtagCTAGTTTCTTTGGCTCAATCTGGGCACTCAATAACACCCGATCTGCTGACT