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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCTAGGTCAGTCAGCTCAGAAAATCCGGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAGgtgtttgccttaattttctgcatcctaccctgtttatatgctttttctttgcataaattactgatggtgttaaatatgttttttgtacctgcaaataagg...

Basic information

species Glycine max
transcript GLYMA02G46200.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23064235|gb|BU579008.1|BU579008
EST:     GGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAG                         ATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATA
genomic: GGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAGgtgtttgcct ... tgtttaacagATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATA
EST: gi|207815546|gb|GD788697.1|GD788697
EST:     GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAG                         ATTGTATTTCGTTCA
genomic: GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAGgtgtttgcct ... tgtttaacagATTGTATTTCGTTCA
EST: gi|13481968|gb|BG511311.1|BG511311
EST:     GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAG                         ATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATA
genomic: GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAGgtgtttgcct ... tgtttaacagATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATA
EST: gi|13251924|gb|BG362827.1|BG362827
EST:     GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAG                         ATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATA
genomic: GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAGgtgtttgcct ... tgtttaacagATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATA
EST: gi|213615236|gb|DB965044.1|DB965044
EST:     GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAG                         ATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATA
genomic: GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAGgtgtttgcct ... tgtttaacagATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATA
EST: gi|213616511|gb|DB965709.1|DB965709
EST:     GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAG                         ATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATA
genomic: GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAGgtgtttgcct ... tgtttaacagATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATA
EST: gi|209721887|gb|BW680046.1|BW680046
EST:     GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAG                         ATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATA
genomic: GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAGgtgtttgcct ... tgtttaacagATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATA
EST: gi|193557293|gb|FK511606.1|FK511606
EST:     GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAG                         ATTGTATTTCGTTCAGGCGGGTGTGGATTTGTCCAGAACTTCAGTCACATA
genomic: GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAGgtgtttgcct ... tgtttaacagATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATA
EST: gi|120491274|gb|EH219441.1|EH219441
EST:     GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAG                         ATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATA
genomic: GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAGgtgtttgcct ... tgtttaacagATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATA
EST: gi|208079599|gb|GD875787.1|GD875787
EST:     GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAG                         ATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATA
genomic: GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAGgtgtttgcct ... tgtttaacagATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATA
EST: gi|209726695|gb|BW672449.1|BW672449
EST:     GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAG                         ATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATA
genomic: GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAGgtgtttgcct ... tgtttaacagATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATA
EST: gi|298170020|gb|HO018644.1|HO018644
EST:     GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAG                         ATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATA
genomic: GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAGgtgtttgcct ... tgtttaacagATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATA
EST: gi|7924360|gb|AW830386.1|AW830386
EST:     TTCCATTGTGGAAAAAGAG                         ATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATA
genomic: TTCCATTGTGGAAAAAGAGgtgtttgcct ... tgtttaacagATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATA
EST: gi|298174924|gb|HO014841.1|HO014841
EST:     GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAG                         ATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATA
genomic: GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAGgtgtttgcct ... tgtttaacagATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTGCTAGGTCAGTCAGCTCAGAAAATCCGGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAGgtgtttgccttaattttctgcatcctaccctgtttatatgctttttctttgcataaattactgatggtgttaaatatgttttttgtacctgcaaataagg

- - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctaccc