Sequence
atgc intronic sequence ATGC exonic sequenceACTCCTCCACATGATCTTCATATTTCTGATTGTCTATATGATTTGCATCCCGGTGATCACGTAGAGATTCAGTGGAGAAGAAACAAAGAATTTCCTTATGgtttgttcctttgctcaacatattcttctacttttactgtttactatggtctttagaatatggttaaagagatatttaaacaagcataaaacaagagtgg...
Basic information
species | Glycine max |
transcript | GLYMA02G44660.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G44660.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G130348_T01 (Zea mays), 5'ss of exon 3
ACTCCTCCACATGATCTTCATATTTCTGATTGTCTATATGATTTGCATCCCGGTGATCACGTAGAGATTCAGTGGAGAAGAAACAAAGAATTTCCTTATGgtttgttcctttgctcaacatattcttctacttttactg--tttactatggtctt--tagaatatggttaaagagatatttaaacaagcataaaacaagagtgg-----------------------------------
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ACCCTTGCGCATGACCTGCACACCTCTGACTGCCTGCATGAGCTCCGGCCCGGCGACCACATCGAGATTCAGTGGAGAAGGAACAAAGAATTCCCATACGgtatgttcccgagccacccagcaacgcttgcttttaatgcattgatgctaatcctatccgatagtggctgaggag-tattttttttttaatcagtggatagtgtgttctcattcatgcacttccatgcatgtttggcag
upper sequence: GLYMA02G44660.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G26850.1 (Arabidopsis thaliana), 5'ss of exon 3
ACTCCTCCACATGATCTTCATATTTCTGATTGTCTATATGATTTGCATCCCGGTGATCACGTAGAGATTCAGTGGAGAAGAAACAAAGAATTTCCTTATGgtttgttcctttgctcaacatattcttctacttttactgtttactatg-gtctttagaatatggttaaagagatatttaaacaagcataaaacaagagtgg
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GCATCACCCCATAATCTCTATGTGTCAGATTCTCTAAATGAGTTAAAACCCGGAGACCACATAGAGATCCAGTGGAGAAGGAACAAAGAGTTTCCTTATGgtaagta----taatctata-atgcttgtggtttggacataatatatatgattctaaaacaagcttgtgtag-----------------------------
upper sequence: GLYMA02G44660.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0009g02700.t01 (Vitis vinifera), 5'ss of exon 3
ACTCCTCCACATGATCTTCATATTTCTGATTGTCTATATGATTTGCATCCCGGTGATCACGTAGAGATTCAGTGGAGAAGAAACAAAGAATTTCCTTATGgtttgttcctttgctcaacatattcttctacttttac-tgtttactatggtctttagaatatggttaaagagatatt--taaacaagcataaaacaagagtgg
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ACTCCTCCACATGATCTTCATATGTCTGACTGTTTGAATGAATTACACCCTGGTGATCACATTGAGATTCAGTGGAGAAGAAACAAGGAATTCCCTTATGgtttgttc-ttcactctatacccttacatccccttacatcagttccagactctttactgttta-tcaaatttttgttgctagatcactactgggtataagct-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|14259413|gb|BG882321.1|BG882321EST: CGGTGATCACGTAGAGATTCAGTGGAGAAGAAACAAAGAATTTCCTTATG GTTGGTGGTATGGTGTTGTAGGCCACTTGGAAGTATGCGATGGGAATGAAA
genomic: CGGTGATCACGTAGAGATTCAGTGGAGAAGAAACAAAGAATTTCCTTATGgtttgttcct ... tttatggcagGTTGGTGGTATGGTGTTGTAGGCCACTTGGAAGTATGCGATGGGAATGAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTCCTCCACATGATCTTCATATTTCTGATTGTCTATATGATTTGCATCCCGGTGATCACGTAGAGATTCAGTGGAGAAGAAACAAAGAATTTCCTTATGgtttgttcctttgctcaacatattcttctacttttactgtttactatggtctttagaatatggttaaagagatatttaaacaagcataaaacaagagtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA