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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGAAACCTGAAGAGTCTAGTTAGCTTGGACTTGTACAACAACAACATATCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtctgtttaataacatattttgactggacagatctgtggcatttgctttcctttactttcatttgaatttattacaagacttcaaatgatgcaggc...

Basic information

species Glycine max
transcript GLYMA02G44250.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298181464|gb|HO022903.1|HO022903
EST:     TCAGGCACCATCCCACCCTCATTGGGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCACTGACAACCGACTAACTGGCCCA
genomic: TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtctgt ... tcctttgcagACGACTCAATGACAACCGACTAACTGGCCCA
EST: gi|6719571|gb|AW307218.1|AW307218
EST:     TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCAATGACAACCGACTAACTGGCCCAATTCCCAAGGAACTGTCTGC
genomic: TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtctgt ... tcctttgcagACGACTCAATGACAACCGACTAACTGGCCCAATTCCCAAGGAACTGTCTGC
EST: gi|209710100|gb|BW653555.1|BW653555
EST:     TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCAATGACAACCGACTAACTGGCCCAATTCCCAAGGAACTGTCTGC
genomic: TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtctgt ... tcctttgcagACGACTCAATGACAACCGACTAACTGGCCCAATTCCCAAGGAACTGTCTGC
EST: gi|192301521|gb|FG994761.1|FG994761
EST:     TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCAATGACAACCGACTAACTGGCCCAATTCCCAAGGAACTGTCTGC
genomic: TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtctgt ... tcctttgcagACGACTCAATGACAACCGACTAACTGGCCCAATTCCCAAGGAACTGTCTGC
EST: gi|14259491|gb|BG882399.1|BG882399
EST:     TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCAATGACAACCGACTAACTGGCCCAATTCCCAAGGAACTGTCTGC
genomic: TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtctgt ... tcctttgcagACGACTCAATGACAACCGACTAACTGGCCCAATTCCCAAGGAACTGTCTGC
EST: gi|17021803|gb|BM092837.1|BM092837
EST:     TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCAATGACAACCGACTAACTGGCCCAATTCCCAAGGAACTGTCTGC
genomic: TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtctgt ... tcctttgcagACGACTCAATGACAACCGACTAACTGGCCCAATTCCCAAGGAACTGTCTGC
EST: gi|8285001|gb|BE022560.1|BE022560
EST:     ATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCAATGACAACCGACTAACTGGCCCAATTCCCAAGGAACTGTCTGC
genomic: ATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtctgt ... tcctttgcagACGACTCAATGACAACCGACTAACTGGCCCAATTCCCAAGGAACTGTCTGC
EST: gi|209710099|gb|BW653554.1|BW653554
EST:     TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCAATGACAACCGACTAACTGGCCCAATTCCCAAGGAACTGTCTGC
genomic: TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtctgt ... tcctttgcagACGACTCAATGACAACCGACTAACTGGCCCAATTCCCAAGGAACTGTCTGC
EST: gi|120530833|gb|EH258966.1|EH258966
EST:     TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCAATGACAACCGACTAACTGGCCCAATTCCCAAGGAACTGTCTGC
genomic: TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtctgt ... tcctttgcagACGACTCAATGACAACCGACTAACTGGCCCAATTCCCAAGGAACTGTCTGC
EST: gi|10708996|gb|BF008781.1|BF008781
EST:     TCANGCACCATCCCACCTTCATTGGGGANATTGAAGAATCTTGTCTTTGT                         ACGACTCAATGACAACCGACTAACTGGCTCAATTCCCAAGGAACTGTCTGC
genomic: TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtctgt ... tcctttgcagACGACTCAATGACAACCGACTAACTGGCCCAATTCCCAAGGAACTGTCTGC
EST: gi|120531133|gb|EH259266.1|EH259266
EST:     TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCAATGACAACCGACTAACTGGCCCAATTCCCAAGGAACTGTCTGC
genomic: TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtctgt ... tcctttgcagACGACTCAATGACAACCGACTAACTGGCCCAATTCCCAAGGAACTGTCTGC
EST: gi|26059546|gb|CA802460.1|CA802460
EST:     TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCAATGACAACCGACTAACTGGCCCAATTCCCAAG
genomic: TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtctgt ... tcctttgcagACGACTCAATGACAACCGACTAACTGGCCCAATTCCCAAG
EST: gi|120530964|gb|EH259097.1|EH259097
EST:     TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCAATGACAACCGACTAACTGGCCCAATTCCCAAGGAACTGTCTGC
genomic: TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtctgt ... tcctttgcagACGACTCAATGACAACCGACTAACTGGCCCAATTCCCAAGGAACTGTCTGC
EST: gi|58020483|gb|CX707225.1|CX707225
EST:     TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCAATGACAACCGACTAACTGGCCCAATTCCCAAGGAACTGTCTGC
genomic: TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtctgt ... tcctttgcagACGACTCAATGACAACCGACTAACTGGCCCAATTCCCAAGGAACTGTCTGC
EST: gi|298168193|gb|HO013456.1|HO013456
EST:     TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTC                         ACGACTCAATGACAACCGACTAACTGGCCC
genomic: TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtctgt ... tcctttgcagACGACTCAATGACAACCGACTAACTGGCCC
EST: gi|21677284|gb|BQ629635.1|BQ629635
EST:     TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCAATGACAACCGACTAACTGGCCCAATTCCCAAGGAACTGTCTGC
genomic: TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtctgt ... tcctttgcagACGACTCAATGACAACCGACTAACTGGCCCAATTCCCAAGGAACTGTCTGC
EST: gi|23726214|gb|BU761091.1|BU761091
EST:     TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCAATGACAACCGACTAACTGGCCCAATTCCCAAGGAACTGTCTGC
genomic: TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtctgt ... tcctttgcagACGACTCAATGACAACCGACTAACTGGCCCAATTCCCAAGGAACTGTCTGC
EST: gi|151394690|gb|EV264561.1|EV264561
EST:     TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCAATGACAACCGACTAACTGGCCCAA
genomic: TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtctgt ... tcctttgcagACGACTCAATGACAACCGACTAACTGGCCCAA
EST: gi|120530517|gb|EH258650.1|EH258650
EST:     TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTT                         ACGACTCAATGACAACCGACTAACTGGCCCAATTCCCAAGGAACTGTCTGC
genomic: TCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtctgt ... tcctttgcagACGACTCAATGACAACCGACTAACTGGCCCAATTCCCAAGGAACTGTCTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTGGAAACCTGAAGAGTCTAGTTAGCTTGGACTTGTACAACAACAACATATCAGGCACCATCCCACCTTCATTGGGGAAATTGAAGAATCTTGTCTTTTTgtaagtctgtttaataacatattttgactggacagatctgtggcatttgctttcctttactttcatttgaatttattacaagacttcaaatgatgcaggc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA