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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAGCTCAAAATGTTGAGAGTTCCCATTGCATAACCATGATGGAAGCCATCAATGATGGGAGGGACCTTCACATCTCAGTGACCATGCCCTCCATTGAGgtgacttggcccaccccatcttttcttagatattattactcttgtataattggttaattttccaattcaatagctaaggtttatatgattcattattgtgctctcag

Basic information

species Glycine max
transcript GLYMA02G44070.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G44070.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv18s0122g00610.t01 (Vitis vinifera), 5'ss of exon 3
TCCAGCTCAAAATGTTGAGAGTTCCCATTGCATAACCATGATGGAAGCCATCAATGATGGGAGGGACCTTCACATCTCAGTGACCATGCCCTCCATTGAGgtgacttggcccaccccatcttttcttagatattattactcttgtata-attggttaattttccaattcaatagctaaggtttatatgattcattattgtgctctcag
||| || |||||||||||||||| ||| ||||| || |||||||||||  | |||||||||| ||| ||||||||||| ||||||||||| ||  | ||||| | |      |   ||| ||   |||      || | | |  | |  | ||   ||  |  ||| | |||   |  | || |    | | | | ||  | |     
TCCGGCCCAAAATGTTGAGAGTTGCCACTGCATTACAATGATGGAAGCTGTTAATGATGGGAAGGATCTTCACATCTCTGTGACCATGCCTTCTGTCGAGgtaattgaaa--atttcatattacattaatgcagatcattttaatttgtactgaaaaaagt--caagtgaat---tgggattcaagaaagtgaatgtttggattgtt-

upper sequence: GLYMA02G44070.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S61_10V6.1 (Physcomitrella patens), 5'ss of exon 3
TCCAGCTCAAAATGTTGAGAGTTCCCATTGCATAACCATGATGGAAGCCATCAATGATGGGAGGGACCTTCACATCTCAGTGACCATGCCCTCCATTGAGgtg----acttg--gcccaccccatcttttcttagatattatt--actcttgtataat-tggttaattttccaattcaatagctaaggt-ttatatgattcattattgtgctctcag------------------------------------
||| |||||||||||||||||||| || ||||| ||||||||||| ||  | ||||||||    ||| | ||  | || || || ||||| ||||||||||||    ||||   |   | ||   |||||| |    | | ||  |    || ||  | ||   | || ||   | | | | |     | ||  ||  ||  ||  | || ||                                        
TCCTGCTCAAAATGTTGAGAGTTCACAGTGCATCACCATGATGGAGGCAGTGAATGATGGTCAAGACTTGCATGTTTCTGTCACTATGCCTTCCATTGAGgtgtgcgactttctgtaaagccgtccttttcctgtgcagtttttgagaactgcatgttgtgaacacttctcaggtcctagaccctcattgttcaattgtttgtttgtttgttcatgacaagcttcttacgttccatgttgatgctctttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207730478|gb|GD705979.1|GD705979
EST:     TCAATGATGGGAGGGACCTTCACATCTCAGTGACCATGCCCTCCATTGAG                         GTGGGTACTGTTGGGGGTGGAACTCAACTTGCATCCCAATCTGCTTGCTTG
genomic: TCAATGATGGGAGGGACCTTCACATCTCAGTGACCATGCCCTCCATTGAGgtgacttggc ... gtgctctcagGTGGGTACTGTTGGGGGTGGAACTCAACTTGCATCCCAATCTGCTTGCTTG
EST: gi|15589641|gb|BI674257.1|BI674257
EST:     TCAATGATGGGAGGGACCTTCACATCTCAGTGACCATGCCCTCCATTGAG                         GTGGGTACTGTTGGGGGTGGAACTCAACTTGCATCCCAATCTGCTTGCTTG
genomic: TCAATGATGGGAGGGACCTTCACATCTCAGTGACCATGCCCTCCATTGAGgtgacttggc ... gtgctctcagGTGGGTACTGTTGGGGGTGGAACTCAACTTGCATCCCAATCTGCTTGCTTG
EST: gi|16281492|gb|BI944515.1|BI944515
EST:     TCAATGATGGGAGGGACCTTCACATCTCAGTGACCATGCCCTCCATTGAG                         GTGGGTACTGTTGGGGGTGGAACTCAACTTGCATCCCAATCTGCTTGCTTG
genomic: TCAATGATGGGAGGGACCTTCACATCTCAGTGACCATGCCCTCCATTGAGgtgacttggc ... gtgctctcagGTGGGTACTGTTGGGGGTGGAACTCAACTTGCATCCCAATCTGCTTGCTTG
EST: gi|254340230|gb|GR858355.1|GR858355
EST:     TCAATGATGGGAGGGACCTTCACATCTCAGTGACCATGCCCTCCATTGAG                         GTGGGTACTGTTGGGGGTGGAACTCAACTTGCATCCCAATCTGCTTGCTTG
genomic: TCAATGATGGGAGGGACCTTCACATCTCAGTGACCATGCCCTCCATTGAGgtgacttggc ... gtgctctcagGTGGGTACTGTTGGGGGTGGAACTCAACTTGCATCCCAATCTGCTTGCTTG
EST: gi|8402758|gb|BE058392.1|BE058392
EST:     ATCTCAGTGACCATGCCCTCCATTGAG                         GTGGGTACTGTTGGGGGTGGAACTCAACTTGCATCCCAATCTGCTTGCTTG
genomic: ATCTCAGTGACCATGCCCTCCATTGAGgtgacttggc ... gtgctctcagGTGGGTACTGTTGGGGGTGGAACTCAACTTGCATCCCAATCTGCTTGCTTG
EST: gi|254322673|gb|GR835495.1|GR835495
EST:     TCAATGATGGGAGGGACCTTCACATCTCAGTGACCATGCCCTCCATTGAG                         GTGGGTACTGTTGGGGGTGGAACTCAACTTGCATCCCAATCTGCTTGCTTG
genomic: TCAATGATGGGAGGGACCTTCACATCTCAGTGACCATGCCCTCCATTGAGgtgacttggc ... gtgctctcagGTGGGTACTGTTGGGGGTGGAACTCAACTTGCATCCCAATCTGCTTGCTTG
EST: gi|16278314|gb|BI942838.1|BI942838
EST:     TCAATGATGGGAGGGACCTTCACATCTCAGTGACCATGCCCTCCATTGAG                         GTGGGTACTGTTGGGGGTGGAACTCAACTTGCATCCCAATCTGCTTGCTTG
genomic: TCAATGATGGGAGGGACCTTCACATCTCAGTGACCATGCCCTCCATTGAGgtgacttggc ... gtgctctcagGTGGGTACTGTTGGGGGTGGAACTCAACTTGCATCCCAATCTGCTTGCTTG
EST: gi|16278257|gb|BI942809.1|BI942809
EST:     TCAATGATGGGAGGGACCTTCACATCTCAGTGACCATGCCCTCCATTGAG                         GTGGGTACTGTTGGGGGTGGAACTCAACTTGCATCCCAATCTGCTTGCTAG
genomic: TCAATGATGGGAGGGACCTTCACATCTCAGTGACCATGCCCTCCATTGAGgtgacttggc ... gtgctctcagGTGGGTACTGTTGGGGGTGGAACTCAACTTGCATCCCAATCTGCTTGCTTG
EST: gi|16278393|gb|BI942880.1|BI942880
EST:     TCAATGATGGGAGGGACCTTCACATCTCAGTGACCATGCCCTCCATTGAG                         GTGGGTACTGTTGGGGGTGGAACTCAACTTGCATCCCAATCTGCTTGCTTG
genomic: TCAATGATGGGAGGGACCTTCACATCTCAGTGACCATGCCCTCCATTGAGgtgacttggc ... gtgctctcagGTGGGTACTGTTGGGGGTGGAACTCAACTTGCATCCCAATCTGCTTGCTTG
EST: gi|193592236|gb|FK546504.1|FK546504
EST:     TCAATGATGGGAGGGACCTTCACATCTCAGTGACCATGCCCTCCATTGAG                         GTGGGTACTGTTGGGGGTGGAACTCAACTTGCATCCCAATCTGCTTGCTTG
genomic: TCAATGATGGGAGGGACCTTCACATCTCAGTGACCATGCCCTCCATTGAGgtgacttggc ... gtgctctcagGTGGGTACTGTTGGGGGTGGAACTCAACTTGCATCCCAATCTGCTTGCTTG
EST: gi|23057020|gb|BU577836.1|BU577836
EST:     TCAATGATGGGAGGGACCTTCACATCTCAGTGACCATGCCCTCCATTGAG                         GTGGGTACTGTTGGGGGTGGAACTCAACTTGCATCCCAATCTGCTTGCTTG
genomic: TCAATGATGGGAGGGACCTTCACATCTCAGTGACCATGCCCTCCATTGAGgtgacttggc ... gtgctctcagGTGGGTACTGTTGGGGGTGGAACTCAACTTGCATCCCAATCTGCTTGCTTG
EST: gi|192294365|gb|FG987294.1|FG987294
EST:     TCAATGATGGGAGGGACCTTCACATCTCAGTGACCATGCCCTCCATTGAG                         GTGGGTACTGTTGGGGGTGGAACTCAACTTGCATCCCAATCTGCATGCTTG
genomic: TCAATGATGGGAGGGACCTTCACATCTCAGTGACCATGCCCTCCATTGAGgtgacttggc ... gtgctctcagGTGGGTACTGTTGGGGGTGGAACTCAACTTGCATCCCAATCTGCTTGCTTG
EST: gi|17152847|gb|BM142780.1|BM142780
EST:     TCAATGATGGGAGGGACCTTCACATCTCAGTGACCATGCCCTCCATTGAG                         GTGGGTACTGTTGGGGGTGGAACTCAACTTGCATCCCAATCTGCTTGCTTG
genomic: TCAATGATGGGAGGGACCTTCACATCTCAGTGACCATGCCCTCCATTGAGgtgacttggc ... gtgctctcagGTGGGTACTGTTGGGGGTGGAACTCAACTTGCATCCCAATCTGCTTGCTTG
EST: gi|208316281|gb|GE114007.1|GE114007
EST:     TCAATGATGGGAGGGACCCTCACATCTCAGTGACCATGCCCTCCATTGAG                         GTGGGTACTGTTGGGGGTGGAACTCAACTTGCATCCCAATCTGCTTGCTTG
genomic: TCAATGATGGGAGGGACCTTCACATCTCAGTGACCATGCCCTCCATTGAGgtgacttggc ... gtgctctcagGTGGGTACTGTTGGGGGTGGAACTCAACTTGCATCCCAATCTGCTTGCTTG
EST: gi|23731678|gb|BU763978.1|BU763978
EST:     TCAATGATGGGAGGGACCTTCACATCTCAGTGACCATGCCCTCCATTGAG                         GTGGGTACTGTTGGGGGTGGAACTCAACTTGCATCCCAATCTGCTTGTTTG
genomic: TCAATGATGGGAGGGACCTTCACATCTCAGTGACCATGCCCTCCATTGAGgtgacttggc ... gtgctctcagGTGGGTACTGTTGGGGGTGGAACTCAACTTGCATCCCAATCTGCTTGCTTG