1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGCAATGTGAGAAGGACAAGGAGCGTGTTCTGGTTCATTGCATGTCAGGAAAGAGTAGgtaagatattgctgcaacatgctatcataagcatgacggtgacatttggcagtgattagtttcatttgaattagttagtgataaccatcataaaataaaagggaattgatataggttattgtactgcagcctttcaaatgaggaatgcagtatataaatgttattattttctctgaatcacatgtattctacggcag
species | Glycine max |
transcript | GLYMA02G43410.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGTAAGGACAAGGAGCGNGTTCTGGTTCATTGCATGTCAGGAAAGAGTAG GTCTCCAGCTATTGTGATTGCATACTTGATGAAGTTCAAAGGGTGGAGACTEST: gi|21994618|gb|BQ786146.1|BQ786146
genomic: AG-AAGGACAAGGAGCGTGTTCTGGTTCATTGCATGTCAGGAAAGAGTAGgtaagatatt ... tctacggcagGTCTCCAGCTATTGTGATTGCATACTTGATGAAGTTCAAAGGGTGGAGACT
EST: GGACAAGGAGCGTGTTCTGGTTCATTGCATGTCAGGAAAGAGTAG GTCTCCAGCTATTGTGATTGCATACTTGATGAAGTTCAAAGGGTGGAGACTEST: gi|9984091|gb|BE658248.1|BE658248
genomic: GGACAAGGAGCGTGTTCTGGTTCATTGCATGTCAGGAAAGAGTAGgtaagatatt ... tctacggcagGTCTCCAGCTATTGTGATTGCATACTTGATGAAGTTCAAAGGGTGGAGACT
EST: GAGAAGGACAAGGAGCGTNNNNTGGTTCATTGCATGTCAGGAAAGAGTAG GTCTCCAGCTATTGTGATTGCATACTTGATGAAGTTCAAAGGGTGGAGACTEST: gi|192311001|gb|FK001610.1|FK001610
genomic: GAGAAGGACAAGGAGCGTGTTCTGGTTCATTGCATGTCAGGAAAGAGTAGgtaagatatt ... tctacggcagGTCTCCAGCTATTGTGATTGCATACTTGATGAAGTTCAAAGGGTGGAGACT
EST: GAGAAGGACAAGGAGCGTGTTCTGGTTCATTGCATGTCAGGAAAGAGTAG GTCTCCAGCTATTGTGATTGCATACTTGATGAAGTTCAAAGGGTGGAGACTEST: gi|13312251|gb|BG405902.1|BG405902
genomic: GAGAAGGACAAGGAGCGTGTTCTGGTTCATTGCATGTCAGGAAAGAGTAGgtaagatatt ... tctacggcagGTCTCCAGCTATTGTGATTGCATACTTGATGAAGTTCAAAGGGTGGAGACT
EST: GAGAAGGACAAGGAGCGTGTTCTGGTTCATTGCATGTCAGGAAAGAGTAG GTCTCCAGCTATTGTGATTGCATACTTGATGA
genomic: GAGAAGGACAAGGAGCGTGTTCTGGTTCATTGCATGTCAGGAAAGAGTAGgtaagatatt ... tctacggcagGTCTCCAGCTATTGTGATTGCATACTTGATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCAATGTGAGAAGGACAAGGAGCGTGTTCTGGTTCATTGCATGTCAGGAAAGAGTAGgtaagatattgctgcaacatgctatcataagcatgacggtgacatttggcagtgattagtttcatttgaattagttagtgataaccatcataaaataaaagggaattgatataggttattgtactgcagcctttcaaatgaggaatgcagtatataaatgttattattttctctgaatcacatgtattctacggcag
- - - - - - - - AAGGAG