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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGATAATGTATGGAAATTGTTTGGGCTGCATGGATACTTATTTTCACCCAAATTGTTTTCGCTGTCACTCTTGTGGTTACCCCATTACCGAGCGCGAGgtagtttggccctctttgatatttttaggggatgttaagatcatcacttacctttttgaccatctcttactgttttctttttttctgttgatccaag

Basic information

species Glycine max
transcript GLYMA02G41920.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G41920.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0019g02430.t01 (Vitis vinifera), 5'ss of exon 5
AGAGATAATGTATGGAAATTGTTTGGGCTGCATGGATACTTATTTTCACCCAAATTGTTTTCGCTGTCACTCTTGTGGTTACCCCATTACCGAGCGCGAGgtagtttggccctctttgatatttttaggggatgttaag-atcatcacttacctttttgaccatctcttactgttttctttttttctgttgatccaag---
 || |||  || |||||||| ||| || |||||||  |||| |||||| ||| | || |||||||||| ||||||||||||||| ||||| ||||  |||||| ||||  | |||| ||| |||  |       |||   || ||   || |  ||||    ||   ||   | ||| |   ||||| ||      |    
GGATATAGGGTTTGGAAATTATTTAGGATGCATGGGAACTTTTTTTCATCCAGAGTGCTTTCGCTGTCGCTCTTGTGGTTACCCAATTACTGAGCATGAGgta-tttgttcttcttggatttttgaatatttaattacctataatttatttctcttttctaaattaattttggatttatgcctttctttttcctttaattc