Sequence
atgc intronic sequence ATGC exonic sequenceGAAACTCCAGAGCCTTTCCCTCTTCCAACCGAAACCTCTATTGTAAAAGCTGCAGCAGGATGGGCTCATTGTGTTGCTGTAACAGgtaaggtggatttccttaccttgcaaccttgaaagaaatagaagaagaaacgagatgatgagactgaaaggagaagtcctgaactaaaatagaacctata...
Basic information
species | Glycine max |
transcript | GLYMA02G41810.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G41810.2 (Glycine max), 5'ss of exon 3
lower sequence: AT3G55580.1 (Arabidopsis thaliana), 5'ss of exon 3
GAAACTCCAGAGCCTTTCCCTCTTCCAACCGAAACCTCTATTGTAAAAGCTGCAGCAGGATGGGCTCATTGTGTTGCTGTAACAGgtaaggtggatttccttaccttgcaaccttgaaagaaatagaagaagaaacga-gatgatgagactgaaaggagaagtcctgaactaaaatagaacctata
|| ||||||||||| || |||||||| | || | | | ||||||| ||| ||||||||||||||||| || ||||||||||| | |||| | | ||| || | | | | || | | |||| ||
GAGACTCCAGAGCCATTTCCTCTTCCTCCAGAGGTTTGTGTACAGAAAGCTGAAGCTGGATGGGCTCATTGTGTGGCAGTAACAGgtaacat---tttcatgagcttacagagacatttgtgtccaagttcatagctttaattgtcttattgaatacag---------------------------
upper sequence: GLYMA02G41810.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0019g02280.t01 (Vitis vinifera), 5'ss of exon 3
GAAACTCCAGAGCCTTTCCCTCTTCCAACCGAAACCTCTATTGTAAAAGCTGCAGCAGGATGGGCTCATTGTGTTGCTGTAACAGgtaaggtggatttccttaccttgcaaccttgaaagaaatagaagaagaaacgagatgatgagactgaaaggagaagtcctgaactaaaatagaacctata--
||||| || |||||||| |||||||| || ||| | ||||| || |||||||||||||| ||||| ||||||| | |||| ||||||| ||||||| | || | | | || |||| | || | || ||| || || | | | | || ||| | || |
GAAACGCCTGAGCCTTTTCCTCTTCCGACTGAAGCTTCTATAGTGAAAGCTGCAGCAGGTTGGGCCCATTGTGCTTCTGTCACAGgtactactgatttccacaact-gtatacagtgaataaattaatttgtaatccctctgttgatgctcaa-gaaaactcagtaaagggaaagaaaaaagggaatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209710825|gb|BW665132.1|BW665132EST: CTCTATTGTAAAAGCTGCAGCAGGATGGGCTCATTGTGTTGCTGTAACAG AACATGGAGAAGTTTATACCATGGGGATGGAAAGAATGCATTCCCTCTGGG
genomic: CTCTATTGTAAAAGCTGCAGCAGGATGGGCTCATTGTGTTGCTGTAACAGgtaaggtgga ... tccttcgcagAACATGGAGAAGTTTATAC-ATGGGGATGGAAAGAATGCATTCCCTCTGGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAACTCCAGAGCCTTTCCCTCTTCCAACCGAAACCTCTATTGTAAAAGCTGCAGCAGGATGGGCTCATTGTGTTGCTGTAACAGgtaaggtggatttccttaccttgcaaccttgaaagaaatagaagaagaaacgagatgatgagactgaaaggagaagtcctgaactaaaatagaacctata
- - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG