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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGGGGGCTACAGTGAGGACATGATTCCAACTgtgtgtatctatctttgctttttgattgcatcttgaatggttacatgtttgaagattgtgagcatgtttgcctttgtaattgaaatataattcttggtgttaaacccag

Basic information

species Glycine max
transcript GLYMA02G41170.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G41170.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G089454_T01 (Zea mays), 5'ss of exon 3
ACTGGGGGCTACAGTGAGGACATGATTCCAACTgtgtgtatctatctttgcttt-ttgattgcatcttgaatggttacatgtttgaagatt--gtgagcatgtttgcctttgtaattgaaatataattcttggtgttaaacccag
|| || ||||||||||||||||||||||||||||| ||||  ||      |||| || ||   ||| ||||    |    |||     |||     |  ||| |   || || ||  |                           
ACAGGTGGCTACAGTGAGGACATGATTCCAACTgtatgtacatacaaacactttctttatgttatcctgaacaaatcttggttatctaattcacctaaaatgctcatctgtgaaacag---------------------------

upper sequence: GLYMA02G41170.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G089454_T03 (Zea mays), 5'ss of exon 2
-------------------------------------------------------------------ACTGGGGGCTACAGTGAGGACATGATTCCAACTgtgtgtatctatctttgcttt-ttgattgcatcttgaatggttacatgtttgaagattg--tgagcatgtttgcctttgtaattgaaatataattcttggtgttaaacccag
                                                                   || || ||||||||||||||||||||||||||||| ||||  ||      |||| || ||   ||| ||||    |    |||     |||     |  ||| |   || || ||  |                           
TCAGTCAAGATACATTACCATGTTATCTGGTGTTTTGATTTTAATTCATGGCTTCTGTGCTTTGCAGACAGGTGGCTACAGTGAGGACATGATTCCAACTgtatgtacatacaaacactttctttatgttatcctgaacaaatcttggttatctaattcacctaaaatgctcatctgtgaaacag---------------------------

upper sequence: GLYMA02G41170.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G171060_T02 (Zea mays), 5'ss of exon 4
ACTGGGGGCTACAGTGAGGACATGATTCCAACTgtgtgtatctatctttgcttt-ttgattgcatcttgaatggttacatgtttgaagattgtgagcatgtttgcctttgtaattgaaatataattcttggtgttaaacccag
|| || |||||||||||||||||||||||||| || ||||  ||  |   |||| || || |  || | ||     |  | | | |     |||| |     ||||  | |    |||| |                      
ACAGGTGGCTACAGTGAGGACATGATTCCAACGgtatgtacatacatacactttctttatggtgtccttaacaaaaatctttgttatctaagtgatctgaaatgcccatctg--cgaaacag---------------------

upper sequence: GLYMA02G41170.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0006g01090.t01 (Vitis vinifera), 5'ss of exon 4
ACTGGGGGCTACAGTGAGGACATGATTCCAACTgtgtgtatctatctttgctttttgattgcatcttgaatggttacatgtttgaagattgtgagcatgtttgcctttgtaattgaaatataattcttggtgttaaacccag
|| || |||||||||||||||||||||||||||||  |||||| | |  |   ||  |||| || |   || ||   ||  ||  || |  |    ||  ||  |   |    |    | | |      |            
ACAGGAGGCTACAGTGAGGACATGATTCCAACTgtaggtatctttatccggggttaaattgaatttcacattgtatgatcctt--agttcttagatat-cttatcagggattcttggctctgacaaacag------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151393791|gb|EV263666.1|EV263666
EST:     ACTGGGGGCTACAGTGAGGACATGATTCCAACT                         GTTGGTTTCAACATGAGAAAAGTGACTAAGGGAAATGTCACAATAAAGCTT
genomic: ACTGGGGGCTACAGTGAGGACATGATTCCAACTgtgtgtatct ... ttaaacccagGTTGGTTTCAACATGAGAAAAGTGACTAAGGGAAATGTCACAATAAAGCTT
EST: gi|8826727|gb|BE210457.1|BE210457
EST:     ACTGGGGGCTACAGTGAGGACATGATTCCAACT                         GTTGGTTTCAACATGAGAAAAGTGACTAAGGGAAATGTCACAATAAAGCTT
genomic: ACTGGGGGCTACAGTGAGGACATGATTCCAACTgtgtgtatct ... ttaaacccagGTTGGTTTCAACATGAGAAAAGTGACTAAGGGAAATGTCACAATAAAGCTT