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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAAGGCCATCAAGAGGTTTCTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttctaattcgttatttttttcatgaaaatttcgcatctgtttatgttatttatttgtatttttaaaaaaaatattattttgcag

Basic information

species Glycine max
transcript GLYMA02G40660.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G40660.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os05g39960.1 (Oryza sativa), 5'ss of exon 3
GACAAGGCCATCAAGAGGTTTCTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttctaattcgttatttttttcatgaaaatttcgcatctgtttatg---ttatttatttgtatttttaaaaaaaatattattttgcag-----
|||||||||||||||||||| | |||||||||||| || || ||||| ||  |||| ||||| ||||| || || ||| ||||  |||||   | |  | | ||     |   |     |     |||||| ||||   | |  | || ||      ||||| || ||  | ||   |     
GACAAGGCCATCAAGAGGTTCCAGGTGAGGAACATCGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaac---caatcttgctaagagctgtctcgttgtccgaaatctgtgtatggattgaacttttcgttgagccaaaaagaacatgttgtttttgttcag

upper sequence: GLYMA02G40660.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g60790.1 (Oryza sativa), 5'ss of exon 3
GACAAGGCCATCAAGAGGTTTCTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttctaattcgttattttt-----ttcatgaaaatttcgcatctgtt-------tatgtta-----tttatttgtatttttaaaaaaaatatt---attttgcag-----------------------------------------------------------------------
|||||||| ||||||||||||| |||||||||||| || || ||||| ||  |||| || || ||||| || || ||  | ||  ||   ||||   | |     ||||      |  ||   | || | || || |         |  ||     |  ||||||  |     | || | | |     ||||||                                                                        
GACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcctctcccccgcttttggtttcttttgctgaatttgtatgtgatgcgaaatcgtagtagaggttggatttgtgatcgccgataacacactggcgatttgcatactgctggaaatttttattctatcttgatattgttgaattgatggcatacaatacaactatctcgttgcag

upper sequence: GLYMA02G40660.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM5G899149_T01 (Zea mays), 5'ss of exon 3
GACAAGGCCATCAAGAGGTTTCTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttctaattcgttatttttttcatgaa--aatttcgcatctgtttatgttatttatttgtatttttaaaaaaaatattattttgcag
|| ||||| |||||| ||||  ||||||||||||||||||| |||||||| || |||||||||||||| || |||||  ||||  ||| || |  |  || |||||| || |||||   |||||    |   | || |||    |     ||| |   || |  |    ||   |||
GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCCGTGAGAGATGTGCAGGAGGCCTGTGTACATGATGgta-ctgtagatatccttatttcttgcatgatttaatttaatttaactgtaggttgaccagagaaattgtcctaacatgttcatttggacag

upper sequence: GLYMA02G40660.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM5G899149_T02 (Zea mays), 5'ss of exon 2
---------------GACAAGGCCATCAAGAGGTTTCTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttctaattcgttatttttttcatgaa--aatttcgcatctgtttatgttatttatttgtatttttaaaaaaaatattattttgcag
               || ||||| |||||| ||||  ||||||||||||||||||| |||||||| || |||||||||||||| || |||||  ||||  ||| || |  |  || |||||| || |||||   |||||    |   | || |||    |     ||| |   || |  |    ||   |||
TTGCTGTACTTGCAGGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCCGTGAGAGATGTGCAGGAGGCCTGTGTACATGATGgta-ctgtagatatccttatttcttgcatgatttaatttaatttaactgtaggttgaccagagaaattgtcctaacatgttcatttggacag

upper sequence: GLYMA02G40660.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM5G827266_T03 (Zea mays), 5'ss of exon 3
GACAAGGCCATCAAGAGGTTTCTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaa---ctttctaattcgttatttttttcatgaaaatttcgcatctgtttatgttatttatttgtatttttaaaaaaaatattattttgcag----------
|||||||| ||||||||||||| |||||||||||| || |||||||| ||  |||| || || |||||||| || ||||||||  ||||   || |||| | |  ||  | | |   |  | |     |||| || |||  |  | || || ||    |    ||   | || |   |          
GACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAACAGGCGGCCATCAGGGACGTCCAGGAAGCATGCGTCTATGATGGTAAAatctctctattcctctagatctgtttcgttagtaataaatct-ttaatgcaacctgtt-gttttgacgagggtaaacgtgttctatggctcaggctac

upper sequence: GLYMA02G40660.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM5G827266_T02 (Zea mays), 5'ss of exon 3
GACAAGGCCATCAAGAGGTTTCTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaa---ctttctaattcgttatttttttcatgaaaatttcgcatctgtttatgttatttatttgtatttttaaaaaaaatattattttgcag-----
|||||||| ||||||||||||| |||||||||||| || |||||||| ||  |||| || || |||||||| || ||||||||  ||||   || |||| | |  ||  | | |   |  | |     |||| || |||  |  | || || ||    |    ||   | || |   |     
GACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAACAGGCGGCCATCAGGGACGTCCAGGAAGCATGCGTCTATGATGgtaaaatctctctattcctctagatctgtttcgttagtaataaatct-ttaatgcaacctgtt-gttttgacgagggtaaacgtgttctatggctcag

upper sequence: GLYMA02G40660.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G129015_T02 (Zea mays), 5'ss of exon 3
GACAAGGCCATCAAGAGGTTTCTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttctaattcgttatttttttcatgaaaatttcgcatctgtttatgttatttatttgtatttttaaaaaaaatattattt-tgcag
|| ||||| |||||| ||||  ||||||||||||||||||| |||||||| || || || |||||||| || |||||  ||||  ||| | |  |  | | |||||   | |||       |    | | | || ||||| ||     |   |    || |   | ||||   |||
GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgtatcatagtcgtcc-ttattagctgcatagtccgatgatctatttataggttatctagagaaaccgtccttaatatcttcatttgcacag

upper sequence: GLYMA02G40660.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G40510.1 (Arabidopsis thaliana), 5'ss of exon 3
GACAAGGCCATCAAGAGGTTTCTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttctaattcgttatttt---tttcatgaaaatttcgcatctgtttatgttatttatttgtatttttaaaaaaaatattattttgcag------------------------------------------------------------------------
||||||||||| ||||||||  | |||||||||||||| || ||||||||  | |||||||| ||||||||| | ||||||||  ||| | ||  | | |  | ||||   |||| |  |  |||   ||   | ||  ||||  | ||    |||| | |  | |  ||||  | |                                                                         
GACAAGGCCATTAAGAGGTTCATTGTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttcattcctctcttttatgtttctttgacctttgttataattctacattataaagtttggatttttagactattggtattgagaaagtttggatttttcgactattggcattgaagtttactgagatctgtaacttgattgaatcatgtaattgacag

upper sequence: GLYMA02G40660.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G40590.1 (Arabidopsis thaliana), 5'ss of exon 3
GACAAGGCCATCAAGAGGTTTCTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttctaattcgttatttt---tttcatgaaaatttcgcatctgtttatgttattta-tttgtatttttaaaaaa--aatattat-tttgcag-------------------------
||||||||||| ||||||||  | |||||||||||||| || ||||||||  | |||||||| ||||||||| | ||||||||  ||| | ||  | | |  | ||||   |||| |  |  |||   ||   | ||  ||||  | |||| ||||||| |  |     ||||  ||| |||                         
GACAAGGCCATTAAGAGGTTCATTGTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttcattcctctcttttatgtttctttgacctttgttataattctacattataaagtttggatttttagactattggcattagatttccagcttgattgaatcatgtaattgacag

upper sequence: GLYMA02G40660.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0004g07940.t01 (Vitis vinifera), 5'ss of exon 3
GACAAGGCCATCAAGAGGTTTCTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttctaattcgttatttttttcatgaaaatttcgcatctgtttatgttatttatttgtatttttaaaaaaaatattattttgcag
||||| || || |||||||||||||||||||||||||| || || ||||| ||  | |||||||| ||||||||||| |||||  |||| ||  |  ||    ||  |||  ||     | |    | || | ||| |  |    ||  ||| ||       | |  || || ||
GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCTGTTCGTGATGTGCAAGAAGCTTGTGTTTATGATAgtaa-ttcttctttatcaatactttctatcttcttcttctttatggtgatgatgatccactgagtttgtattt---ttctacttgtgaag

upper sequence: GLYMA02G40660.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0067g02700.t01 (Vitis vinifera), 5'ss of exon 4
GACAAGGCCATCAAGAGGTTTCTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttctaattcgttatttttttcatgaaaatttcgcatctgtttatgttatttatttgtatttttaaaaaaaatattattttgcag
|||||||| |||||||||||| ||||||||||||| || || || |||||||| || ||||| ||||| || || ||||||||  ||||  ||  | ||| |  ||||||   | |    || |      | | |||| ||||| ||    |||       |  |   | || ||
GACAAGGCAATCAAGAGGTTTTTGGTGAGGAACATCGTGGAGCAAGCTGCAGTGAGGGATGTTCAGGAGGCCTGCGTCTATGACAgtaa--ttacacttcctctttttttcggtaa----tttgt-----tctgtgttttttatctg---atttgggggctaattctctgtgtag

upper sequence: GLYMA02G40660.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S169_19V6.1 (Physcomitrella patens), 5'ss of exon 3
GACAAGGCCATCAAGAGGTTTCTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaact-------------ttctaattcgttatttttttca--tgaaaatttcgcatctgtttatgttatttatttgtatttttaaaaaaaatattattttgcag---------------------------------------------------------------
||||||||| | ||| ||||| ||||| | ||||||||||| |||||||| ||| | |||||||| |||||||| || || ||  |||| |             ||| ||||| || | | |  ||  |||  |    | |   |  ||  |||   |   |  ||||  |    | |     ||| ||                                                                
GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcagacaatagtcttcaaattcattttatgtaccacctgattagaaaggacgaggctaaattac--aacagggttttggatgtgacttaccatttacaactcctgggcttcatggaggcaacatttgacgagttctgttgctgaattgtctatgtgttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209714126|gb|BW679453.1|BW679453
EST:     TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAAC                         AATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttct ... tattttgcagAATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
EST: gi|298193161|gb|HO033595.1|HO033595
EST:     TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAAC                         AATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttct ... tattttgcagAATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
EST: gi|6667682|gb|AW279133.1|AW279133
EST:     TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAAC                         AATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttct ... tattttgcagAATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
EST: gi|12773993|gb|BG238920.1|BG238920
EST:     TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAAC                         AATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttct ... tattttgcagAATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
EST: gi|58025014|gb|CX711755.1|CX711755
EST:     TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAAC                         AATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttct ... tattttgcagAATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
EST: gi|151396481|gb|EV266358.1|EV266358
EST:     TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAAC                         AATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttct ... tattttgcagAATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
EST: gi|151403147|gb|EV272957.1|EV272957
EST:     TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAAC                         AATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttct ... tattttgcagAATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
EST: gi|192294571|gb|FG986420.1|FG986420
EST:     TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAAC                         AATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttct ... tattttgcagAATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
EST: gi|298176835|gb|HO023308.1|HO023308
EST:     TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAAC                         AATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttct ... tattttgcagAATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
EST: gi|193666318|gb|FK612265.1|FK612265
EST:     TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAAC                         AATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttct ... tattttgcagAATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
EST: gi|193385653|gb|FK350259.1|FK350259
EST:     GTGTCTATGAAC                         AATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
genomic: GTGTCTATGAACgtaactttct ... tattttgcagAATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
EST: gi|19346572|gb|BM891452.1|BM891452
EST:     TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAAC                         AATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttct ... tattttgcagAATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
EST: gi|18712547|gb|BM522657.1|BM522657
EST:     TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAAC                         AATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttct ... tattttgcagAATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
EST: gi|298184997|gb|HO030210.1|HO030210
EST:     TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTACGAAC                         AATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttct ... tattttgcagAATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
EST: gi|254334360|gb|GR844145.1|GR844145
EST:     TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAAC                         AATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttct ... tattttgcagAATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
EST: gi|19053086|gb|BM731753.1|BM731753
EST:     TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAAC                         AATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttct ... tattttgcagAATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
EST: gi|192294353|gb|FG987282.1|FG987282
EST:     TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAAC                         AATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttct ... tattttgcagAATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
EST: gi|6964412|gb|AW433105.1|AW433105
EST:     TGTTGAACAGGCTGCAGTCAGAGATGTGCATGAAGCTTGTGTCTATGAAC                         AATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttct ... tattttgcagAATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
EST: gi|6913768|gb|AW395298.1|AW395298
EST:     TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAAC                         AATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTNTCTTGTG
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttct ... tattttgcagAATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
EST: gi|298176415|gb|HO026650.1|HO026650
EST:     TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAAC                         AATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttct ... tattttgcagAATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
EST: gi|209714125|gb|BW679452.1|BW679452
EST:     TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGATTGTGTCTATGAAC                         AATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttct ... tattttgcagAATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
EST: gi|7233278|gb|AW568626.1|AW568626
EST:     TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAAC                         AATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttct ... tattttgcagAATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
EST: gi|298170159|gb|HO018783.1|HO018783
EST:     TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAAC                         AATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttct ... tattttgcagAATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
EST: gi|254334359|gb|GR844144.1|GR844144
EST:     TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAAC                         AATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttct ... tattttgcagAATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
EST: gi|13790626|gb|BG653217.1|BG653217
EST:     TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAAC                         AATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttct ... tattttgcagAATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
EST: gi|254337349|gb|GR845132.1|GR845132
EST:     TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAAC                         AATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttct ... tattttgcagAATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
EST: gi|12774383|gb|BG239310.1|BG239310
EST:     TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAAC                         AATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttct ... tattttgcagAATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
EST: gi|18711106|gb|BM522560.1|BM522560
EST:     TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAAC                         AATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttct ... tattttgcagAATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
EST: gi|7284083|gb|AW596682.1|AW596682
EST:     TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAAC                         AATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttct ... tattttgcagAATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACAAGGCCATCAAGAGGTTTCTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttctaattcgttatttttttcatgaaaatttcgcatctgtttatgttatttatttgtatttttaaaaaaaatattattttgcag

- - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG