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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCACTACGGATATCCCATCTCCACTAATGGATCTCAGTGCCCTTATATCTTCTTTTTCAAATAAGGGCTTCAACACCAAGGAAATGGTAGCTCTCTCAGgtaaattactcactaactttgactttaattgattaattaatgacattaatataagtaagattatgtgaacaatattatcacacatatgaatctttatcag...

Basic information

species Glycine max
transcript GLYMA02G40000.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|308098226|gb|HO759967.1|HO759967
EST:     TTCTTTTTCAAATAAGGGCTTCAACACCAAGGAAATGGTAGCTCTCTCAG                         GAGCTCATACAACAGGGCAAGCCAGGTGTCAGCTATTCAGAGGCAGGGTTT
genomic: TTCTTTTTCAAATAAGGGCTTCAACACCAAGGAAATGGTAGCTCTCTCAGgtaaattact ... aaataaatagGAGCTCATACAACAGGGCAAGCCAGGTGTCAGCTATTCAGAGGCAGGGTTT
EST: gi|308098469|gb|HO760210.1|HO760210
EST:     TTCTTTTTCAAATAAGGGCTTCAACACCAAGGAAATGGTAGCTCTCTCAG                         GAGCTCATACAACAGGGCAAGCCAGGTGTCAGCTATTCAGAGGCAGGGTTT
genomic: TTCTTTTTCAAATAAGGGCTTCAACACCAAGGAAATGGTAGCTCTCTCAGgtaaattact ... aaataaatagGAGCTCATACAACAGGGCAAGCCAGGTGTCAGCTATTCAGAGGCAGGGTTT
EST: gi|308099130|gb|HO760971.1|HO760971
EST:     TTCTTTTTCAAATAAGGGCTTCAACACCAAGGAAGTGGCAGCTCTCTCAG                         GAGCTCATACAACAGGGCAAGCCAGGTGTCAGCTATTCAGAGGCAGGGTTT
genomic: TTCTTTTTCAAATAAGGGCTTCAACACCAAGGAAATGGTAGCTCTCTCAGgtaaattact ... aaataaatagGAGCTCATACAACAGGGCAAGCCAGGTGTCAGCTATTCAGAGGCAGGGTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCACTACGGATATCCCATCTCCACTAATGGATCTCAGTGCCCTTATATCTTCTTTTTCAAATAAGGGCTTCAACACCAAGGAAATGGTAGCTCTCTCAGgtaaattactcactaactttgactttaattgattaattaatgacattaatataagtaagattatgtgaacaatattatcacacatatgaatctttatcag

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