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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGAAGCTGTTTTGTGATAAAGACTACCCAGAAAAGCCCCCTAGTGTTCGGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcatttataattttccacatgcttttgttttataaatagtttttgataagtgcatgctaggacatataaactgtgctaataacagtgttttccattt...

Basic information

species Glycine max
transcript GLYMA02G35990.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G35990.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0007g02580.t01 (Vitis vinifera), 5'ss of exon 3
ACTGAAGCTGTTTTGTGATAAAGACTACCCAGAAAAGCCCCCTAGTGTTCGGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcatttataattttccacatgct--tttgttttataa-atagtttttg-ataagtgcatgctaggacatataaactgtgctaataacagtgttttccattt
  |||||||||| ||||| ||||| || ||||| ||||| || ||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||  |    |  ||||  |  || || || | |   |||| ||| |   |||  || |    |  ||      || | ||  |    || ||     
GTTGAAGCTGTTCTGTGACAAAGATTATCCAGAGAAGCCACCAAGTGTCCGTTTTCATTCACGGATCAACATGACTTGTGTTAACCATGAAACTGGAGTGgtaaaattttgatccctttacattataattggtcttgttatgcagttgttgcactggtg-gtgtttatgctcattgtagttgatgatctccagattctcag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15287430|gb|BI471321.1|BI471321
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|18040006|gb|BM308300.1|BM308300
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|254349094|gb|GR860366.1|GR860366
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|4307444|gb|AI444048.1|AI444048
EST:     GTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACCTGGAGTG                         -TTGAACCAAAGAAATTTG-TCTTCTT
genomic: GTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAAC-TGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTT
EST: gi|21675327|gb|BQ627688.1|BQ627688
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|22932167|gb|BU549306.1|BU549306
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAANNNGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|27426798|gb|CA938318.1|CA938318
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|19348365|gb|BM892897.1|BM892897
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|58018614|gb|CX705356.1|CX705356
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|254316764|gb|GR828301.1|GR828301
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|192315990|gb|FK007109.1|FK007109
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|27425018|gb|CA936538.1|CA936538
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|12688734|gb|BG155070.1|BG155070
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|254327956|gb|GR834921.1|GR834921
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|15813071|gb|BI785346.1|BI785346
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|13480511|gb|BG509854.1|BG509854
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|21994159|gb|BQ785687.1|BQ785687
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|14258514|gb|BG881422.1|BG881422
EST:     GGCTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTGGGTCTTCTTGCAAATTGGCAAATACAGTCCACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|4396099|gb|AI495096.1|AI495096
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGC
EST: gi|58024425|gb|CX711166.1|CX711166
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|31460525|gb|CD402493.1|CD402493
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|12497027|gb|BG047360.1|BG047360
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATNTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|6455149|gb|AW185832.1|AW185832
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAGATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|16341891|gb|BI967486.1|BI967486
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|15286664|gb|BI470555.1|BI470555
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|254349093|gb|GR860365.1|GR860365
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|15286444|gb|BI470343.1|BI470343
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|6341954|gb|AW164778.1|AW164778
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|21286090|gb|BQ473961.1|BQ473961
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|15814040|gb|BI786315.1|BI786315
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|254343063|gb|GR859225.1|GR859225
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|23725959|gb|BU760954.1|BU760954
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|193437905|gb|FK399194.1|FK399194
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAG
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAG
EST: gi|12773143|gb|BG238070.1|BG238070
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|254327955|gb|GR834920.1|GR834920
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|254316765|gb|GR828302.1|GR828302
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|192315989|gb|FK007108.1|FK007108
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|9258943|gb|BE347090.1|BE347090
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|58018289|gb|CX705031.1|CX705031
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|213611874|gb|DB958912.1|DB958912
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|31455911|gb|CD397939.1|CD397939
EST:     GAAACTGGAGTG                         GTTGAACCCAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
EST: gi|254329681|gb|GR839234.1|GR839234
EST:     GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTG                         GTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC
genomic: GGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGgtatcattta ... aatgaaacagGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACC