Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGAATGATCAATCACAATGCTTGGAGACCCCAGAGAGGATTGCCTGAGAGATCGGTTTCTGTTCTGCGTGCTTGGCTCTTTGAACACTTTCTCCACCCgtaaggacacccaaaatctcattttttttaatattttgtaagttgaaggttctttgtgttgaaatgacttgagtttggtttttttcag

Basic information

species Glycine max
transcript GLYMA02G35450.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G35450.3 (Glycine max), 5'ss of exon 3
lower sequence: AT2G35940.2 (Arabidopsis thaliana), 5'ss of exon 3
-TGGGAATGATCAATCACAATGCTTGGAGACCCCAGAGAGGATTGCCTGAGAGATCGGTTTCTGTTCTGCGTGCTTGGCTCTTTGAACACTTTCTCCACCCgtaaggacacccaaaat-ctcattttttttaatattttgtaagttgaaggttctttgtgttgaaatgacttgagtttggtttttttcag
 |    ||  |     | |||||||||||||| ||  | ||  | || ||  || | || || ||||| |||||||||||||| ||||||||||| || ||||||| | |||||  || | ||  |    || | |||  | | | |||       |  ||     | | |||  |||  ||||  | ||
TTCAACATCCTTC-CAATAATGCTTGGAGACCTCAACGTGGTCTCCCAGAACGAGCCGTCTCAGTTCTCCGTGCTTGGCTCTTCGAACACTTTCTTCATCCgtaagta-acccactatacacacatgcactact-tttcatcactggaacacaaactcagtctc--taagttgtctttc-ttttaattag

upper sequence: GLYMA02G35450.3 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0105g00230.t01 (Vitis vinifera), 5'ss of exon 10
TGGGAATGATCAATCACAATGCTTGGAGACCCCAGAGAGGATTGCCTGAGAGATCGGTTTCTGTTCTGCGTGCTTGGCTCTTTGAACACTTTCTCCACCCgtaaggacacccaaaatctcattttttttaatattttgtaagttgaaggttctttgtgttgaaatgacttgagtttggtttttttcag
||||||||||| | || |||| ||||||||||||||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||| ||||||||||||| ||     || | |  ||| ||||     ||   |         |||    || ||| ||   |||  | ||     ||||||
TGGGAATGATCCAACAGAATGTTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCCgtaagcacctttcaattttattttatttttccccttcaaagcccagtaattccagttgctgagatattttggttgtg-----tttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19270212|gb|BM886468.1|BM886468
EST:     AGATCGGTTTCTGTTCTGCGTGCTTGGCTCTTTGAACACTTTCTCCACCC                         TTATCCCAAGGACTCGGACAAACACATGCTTGCAAAACAAACAGGGCTCAC
genomic: AGATCGGTTTCTGTTCTGCGTGCTTGGCTCTTTGAACACTTTCTCCACCCgtaaggacac ... tttttttcagTTATCCCAAGGACTCGGACAAACACATGCTTGCAAAACAAACAGGGCTCAC