Sequence
atgc intronic sequence ATGC exonic sequenceTGGTGGAGAGGGAAGTGGGAAGCGTAGCTCTGAATTGTCAACTACGGAGAGACAAGAAATTCAGATGAAGAAAGCCAAGCTAATCAACATGCTTGATGAGgtaatctttttaatttgttctgtatttgatttgattaataagtgcataaataaatgaaaaaatagattttttggtactgtttttttttttattattagag...
Basic information
species | Glycine max |
transcript | GLYMA02G35450.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G35450.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os11g06020.1 (Oryza sativa), 5'ss of exon 2
TGGTGGAGAGGGAAGTGGGAAGCGTAGCTCTGAATTGTCAACTACGGAGAGACAAGAAATTCAGATGAAGAAAGCCAAGCTAATCAACATGCTTGATGAGgtaatctttttaatttgttctgtatttgatttgattaataagtgcataaataaatgaaaaaatagattttttggt--actgtttttttttttattattagag--
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CGCCAAGAGCGGCGGCGCGCCGCCGCCGCCGGAGATGTCGACGGCGGAGCGGCAGGAGCTGCAGATGAAGAAAGGAAAGCTGATTAACATGCTTGATGAGgtcag-taattaattaattaattaattaatt-aattgagcactg--ttagtttttttctttttgttttttgtgattagaaaaacgcaagtatattgcttgtatt
upper sequence: GLYMA02G35450.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G35940.2 (Arabidopsis thaliana), 5'ss of exon 2
TGGTGGAGAGGGAAGTGGGAAGCGTAGCTCTGAATTGTCAACTACGGAGAGACAAGAAATTCAGATGAAGAAAGCCAAGCTAATCAACATGCTTGATGAGgtaatc----tttttaatttgttctgta---tttgatttgattaataagtgcataaataaatgaaaaaatagattttttggtactgtttttttttttattattagag
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CGGAGCAGAAGCAGCCGGGAAACGTCCGGTGGAGCTAGGCACGGCAGAGAGACAAGAAATACAGATGAAGAAAGCAAAACTTAGTAACATGCTTCATGAGgtaacaacaatacgtattatatacaataagcctacatatactgagtgctctcttatatcacacatgaagtggacttaaaagttctgtccctaagattttc-------
upper sequence: GLYMA02G35450.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0105g00230.t01 (Vitis vinifera), 5'ss of exon 9
TGGTGGAGAGGGAAGTGGGAAGCGTAGCTCTGAATTGTCAACTACGGAGAGACAAGAAATTCAGATGAAGAAAGCCAAGCTAATCAACATGCTTGATGAGgtaatctttttaatttgttctgtatttgatttgattaataagtgcataaataaatgaaaaaatagattttttggtactgtttttttttttattattagag-----------
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TGGAGGAGAAACAAGCACCAAACGCAGCGCCGACCTTTCAACTGCTGAGAGGCAAGAGATTCAGATGAAGAAAGCTAAGCTCCTCAACATGCTTGATGAGgta----tgacatgagggctcgtaat--acttgttttaccattcca-----atttggtgaagttcttttctttttcttgttttttattttggaaatggagttgtttttcatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|13481450|gb|BG510793.1|BG510793EST: GACAAGAAATTCAGATGAAGAAAGCCAAGCTAATCAACATGCTTGATGAG GTGGAGCAAAGGTACAGGCAGTACCACAGCCAGATGCAGATTGTGATATCC
genomic: GACAAGAAATTCAGATGAAGAAAGCCAAGCTAATCAACATGCTTGATGAGgtaatctttt ... gggattgaagGTGGAGCAAAGGTACAGGCAGTACCACAGCCAGATGCAGATTGTGATATCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGTGGAGAGGGAAGTGGGAAGCGTAGCTCTGAATTGTCAACTACGGAGAGACAAGAAATTCAGATGAAGAAAGCCAAGCTAATCAACATGCTTGATGAGgtaatctttttaatttgttctgtatttgatttgattaataagtgcataaataaatgaaaaaatagattttttggtactgtttttttttttattattagag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT