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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcacatgagaccaatatatttgggccttaaataaggctgggtcttaattgaaccctgggcgcgactttgtggggctcggggatggggccttagtt...

Basic information

species Glycine max
transcript GLYMA02G33350.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G33350.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0007g09010.t01 (Vitis vinifera), 5'ss of exon 3
GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcacatgagaccaatatatttgggccttaaataaggctgggtcttaattgaaccctgggcgcgactt---tgtggg-gctcggggatggggccttagtt
| ||| |||||||||||||||| || |||||||||||  |||| |||||||  | |||||  | | |  || | |  |   |||||    |   |  |     | || |||    |   |   | |     |||       | |||| |   
GGGGCCTGAATGTGGAAGGAGAGGCTGACAGCTGGGATTTTGGTGTAGgtaaat-acatggaatctaactact-gaacagaaaatactctta--ttctgtcacagccttggatttggtctcagtataaatactcttactctgtgcctcaacc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192296776|gb|FG993074.1|FG993074
EST:     GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG                         GTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
genomic: GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcaca ... tctggagcagGTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
EST: gi|207705574|gb|GD688712.1|GD688712
EST:     TGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG                         GTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
genomic: TGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcaca ... tctggagcagGTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
EST: gi|7924639|gb|AW830665.1|AW830665
EST:     GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG                         GTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
genomic: GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcaca ... tctggagcagGTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
EST: gi|298169342|gb|HO020702.1|HO020702
EST:     GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG                         GTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
genomic: GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcaca ... tctggagcagGTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
EST: gi|13251945|gb|BG362848.1|BG362848
EST:     GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG                         GTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
genomic: GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcaca ... tctggagcagGTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
EST: gi|9899509|gb|BE608477.1|BE608477
EST:     GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG                         GTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
genomic: GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcaca ... tctggagcagGTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
EST: gi|208112790|gb|GD909757.1|GD909757
EST:     GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG                         GTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
genomic: GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcaca ... tctggagcagGTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
EST: gi|14990995|gb|BI316668.1|BI316668
EST:     GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG                         GTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
genomic: GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcaca ... tctggagcagGTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
EST: gi|21994919|gb|BQ786447.1|BQ786447
EST:     GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG                         GTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
genomic: GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcaca ... tctggagcagGTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
EST: gi|16347920|gb|BI973515.1|BI973515
EST:     GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG                         GTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
genomic: GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcaca ... tctggagcagGTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
EST: gi|151409952|gb|EV279760.1|EV279760
EST:     GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG                         GTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTCGGCGC
genomic: GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcaca ... tctggagcagGTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATT-GGCGC
EST: gi|207805139|gb|GD778676.1|GD778676
EST:     GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG                         GTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
genomic: GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcaca ... tctggagcagGTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
EST: gi|58017950|gb|CX704692.1|CX704692
EST:     GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG                         GTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
genomic: GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcaca ... tctggagcagGTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
EST: gi|208257686|gb|GE053755.1|GE053755
EST:     TGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG                         GTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
genomic: TGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcaca ... tctggagcagGTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
EST: gi|7234496|gb|AW569833.1|AW569833
EST:     GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG                         GTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
genomic: GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcaca ... tctggagcagGTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
EST: gi|151409483|gb|EV279291.1|EV279291
EST:     GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG                         GTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
genomic: GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcaca ... tctggagcagGTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
EST: gi|33390499|gb|CA853694.1|CA853694
EST:     GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG                         GTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
genomic: GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcaca ... tctggagcagGTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
EST: gi|12774209|gb|BG239136.1|BG239136
EST:     GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG                         GTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
genomic: GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcaca ... tctggagcagGTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
EST: gi|207826665|gb|GD798278.1|GD798278
EST:     GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG                         GTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
genomic: GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcaca ... tctggagcagGTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
EST: gi|57575937|gb|CX548908.1|CX548908
EST:     GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG                         GTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
genomic: GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcaca ... tctggagcagGTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
EST: gi|193395336|gb|FK357829.1|FK357829
EST:     GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG                         GTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
genomic: GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcaca ... tctggagcagGTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
EST: gi|298198180|gb|HO039719.1|HO039719
EST:     GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG                         GTGCAGGATTTTATCTCAATGCCACACAGGAGAAATGGAAGAATTGGCGCA
genomic: GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcaca ... tctggagcagGTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
EST: gi|151396504|gb|EV266381.1|EV266381
EST:     GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG                         GTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
genomic: GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcaca ... tctggagcagGTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
EST: gi|58020784|gb|CX707526.1|CX707526
EST:     GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG                         GTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
genomic: GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcaca ... tctggagcagGTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
EST: gi|193642954|gb|FK587800.1|FK587800
EST:     GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG                         GTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
genomic: GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcaca ... tctggagcagGTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
EST: gi|151404093|gb|EV273903.1|EV273903
EST:     GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG                         GTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
genomic: GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcaca ... tctggagcagGTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
EST: gi|298171089|gb|HO016121.1|HO016121
EST:     GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCATGGAGTAG                         GTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
genomic: GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcaca ... tctggagcagGTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
EST: gi|207715679|gb|GD697479.1|GD697479
EST:     GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG                         GTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
genomic: GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcaca ... tctggagcagGTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
EST: gi|298191019|gb|HO038498.1|HO038498
EST:     GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG                         GTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
genomic: GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcaca ... tctggagcagGTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
EST: gi|208044730|gb|GD841098.1|GD841098
EST:     GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG                         GTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
genomic: GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcaca ... tctggagcagGTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
EST: gi|298166560|gb|HO009999.1|HO009999
EST:     GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG                         GTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
genomic: GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcaca ... tctggagcagGTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
EST: gi|192298137|gb|FG991417.1|FG991417
EST:     GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG                         GTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
genomic: GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcaca ... tctggagcagGTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
EST: gi|58021316|gb|CX708057.1|CX708057
EST:     GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG                         GTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
genomic: GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcaca ... tctggagcagGTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
EST: gi|298193463|gb|HO033897.1|HO033897
EST:     GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG                         GTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
genomic: GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcaca ... tctggagcagGTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
EST: gi|298178548|gb|HO024283.1|HO024283
EST:     GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG                         GTGCAGGATTTTATCTCAATGCCACACAAGAGAAACGGAAGAATTGGCGCA
genomic: GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcaca ... tctggagcagGTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
EST: gi|58017299|gb|CX704041.1|CX704041
EST:     GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG                         GTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
genomic: GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcaca ... tctggagcagGTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
EST: gi|192314972|gb|FK010790.1|FK010790
EST:     GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAG                         GTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA
genomic: GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcaca ... tctggagcagGTGCAGGATTTTATCTCAATGCCACACAAGAGAAATGGAAGAATTGGCGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGGCTTGAATGTGGAAGGAGAAGCAGACAGCTGGGACCTTGGAGTAGgtatgtcacatgagaccaatatatttgggccttaaataaggctgggtcttaattgaaccctgggcgcgactttgtggggctcggggatggggccttagtt

- - - - - - TGGAAG
- - - - - - -  AAGGAG
- - - - - - - - AGGAGA
- - - - - - - -  GGAGAA
- - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtggggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggatg