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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGGTGGAGTTGCATCTGGGTTTAAAAAACCTGAAGAAGAGAAGTTTGAAACATGTTTGTATGTATGCAGAGGGAAAAGAGTTGTTAGATTGAGACAGgtatagtgttctctattattcatgaacgtcataaattcagtgcgcatgaagtttgacattttggtttgatag

Basic information

species Glycine max
transcript GLYMA02G32100.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G32100.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os03g24220.2 (Oryza sativa), 5'ss of exon 5
GGAGGGTGGAGTTGCATCTGGGTTTAAAAAACCTGAAGAAGAGAAGTTTGAAACATGTTTGTATGTATGCAGAGGGAAAAGAGTTGTTAGATTGAGACAGgta--tagtgtt----ctctattattcatgaacgtcataaattcagtgcgc-atgaa-gtttgacattttggtttgatag
|||||| ||  | || ||||||||||||| ||||||||| || |||||||||||| |  | ||| | |||| |||||| |||| | | ||| | | | ||||   || | ||    |||  |  ||| |  ||  | | |  ||     |  ||  |   |  |  |  |   || |   
GGAGGGAGGTTTCGCCTCTGGGTTTAAAACACCTGAAGAGGATAAGTTTGAAACAAGGCTATATATTTGCAAAGGGAAGAGAGCTATCAGAGTTAAAGAGgtgactactatttcacctccctgtttcttagactactttatctcctcatgttatatacactaaatgtcctatattcag--

upper sequence: GLYMA02G32100.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G047310_T02 (Zea mays), 5'ss of exon 5
GGAGGGTGGAGTTGCATCTGGGTTTAAAAAACCTGAAGAAGAGAAGTTTGAAACATGTTTGTATGTATGCAGAGGGAAAAGAGTTGTTAGATTGAGACAGgtata----gtgttctctattatt-catgaacgtcataaattcagtgcgca---tgaagtttgacattttggtttgatag
|||||||||  |||| |||||||| ||||| |||||||| || |||||||||||| | |||||| ||||||||||||| |||| | || |  | | | |||||||     |   | |  ||| | ||      | | || |||||  |      || |   || | | || |||      
GGAGGGTGGTTTTGCCTCTGGGTTCAAAAAGCCTGAAGAGGAAAAGTTTGAAACACGGTTGTATATATGCAGAGGGAAGAGAGCTATTCGGGTTAAAGAGgtatatgagattcacccccttactgcacattatttacaatttcagctcaataattggaccctgccttctttgttcag---

upper sequence: GLYMA02G32100.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G180988_T01 (Zea mays), 5'ss of exon 5
GGAGGGTGGAGTTGCATCTGGGTTTAAAAAACCTGAAGAAGAGAAGTTTGAAACATGTTTGTATGTATGCAGAGGGAAAAGAGTTGTTAGATTGAGACAGgtatag----tgttctctattatt------catgaacgtcataaattcagtgcgcatgaagtttgacattttggtttgatag
|||||||||  | || |||||||| ||||| |||||||| ||||||||||||||| | |||||| | ||||||||||| |||| | || |  | | | |||||| |        | |  ||  |      |||  ||    | |  ||| |     || |   || | | || |||      
GGAGGGTGGTTTCGCCTCTGGGTTCAAAAAGCCTGAAGAGGAGAAGTTTGAAACACGGTTGTATATTTGCAGAGGGAAGAGAGCTATTCGGGTTAAAGAGgtatgggagacacacccccttgctgcacatcatttacaatttcagctcaataattgtggatgctgccttctttgttcag---

upper sequence: GLYMA02G32100.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G57410.1 (Arabidopsis thaliana), 5'ss of exon 6
GGAGGGTGGAGTTGCATCTGGGTTTAAAAAACCTGAAGAAGAGAAGTTTGAAACATGTTTGTATGTATGCAGAGGGAAAAGAGTTGTTAGATTGAGACAGgtatagtgttctctattattcatgaacgtcataaattcagtgcgcatgaa-gtttgacattttggt-ttgatag--------------
 |||||||| ||||| ||||| ||||||||||| || || ||| ||||||||||  |  |||||   |||| ||| ||| | | |||    ||||  ||||| |  | | ||  |  |||  |  | ||  || | ||  | |||||||  |||| | || |   |  | ||                
AGAGGGTGGTGTTGCGTCTGGATTTAAAAAACCGGAGGAGGAGGAGTTTGAAACCCGGCTGTATACCTGCAAAGGAAAACGTGCTGTCCACTTGAAGCAGgttttctttgctgcag-atttttagaagtgttacactctcttcgcatgagtgtttaatatgtatatacttatctcttttcttttgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22931110|gb|BU548249.1|BU548249
EST:     AAACATGTTTGTATGTATGCAGAGGGAAAAGAGTTGTTAGATTGAGACAG                         GTCCCTTTTGCAAGGTCTTCATTGAACCATGAAGATGTATTCATACTAGAC
genomic: AAACATGTTTGTATGTATGCAGAGGGAAAAGAGTTGTTAGATTGAGACAGgtatagtgtt ... ggtttgatagGTCCCTTTTGCAAGGTCTTCATTGAACCATGAAGATGTATTCATACTAGAC