Sequence
atgc intronic sequence ATGC exonic sequenceCAAAACCGACGTATTCCACCTTGTTTTTGGCGTGTGGAAGACCCCAGCCGAACGTTGCTTTATGTGGATTGGTGGCTTCAGGCCATCTGAACTCATCAAGgtatatatatgtaaattctaacgtgtcccacttaattttttatatcaacaaatattactaattaatatgtcatgttagtaaaaaatttaatcttataatc...
Basic information
species | Glycine max |
transcript | GLYMA02G30090.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G30090.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0007g06160.t01 (Vitis vinifera), 5'ss of exon 9
CAAAACCGACGTATTCCACCTTGTTTTTGGCGTGTGGAAGACCCCAGCCGAACGTTGCTTTATGTGGATTGGTGGCTTCAGGCCATCTGAACTCATCAAGgtatatatatgtaaattctaacgtgtcccacttaattttttatatcaacaaatattactaattaatatgtcatgttagtaaaaaatttaatcttataatc--------
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CAAGTCCGATGTCTTTCATCTTGTTTCGGGCATGTGGAAGACTCCGGCCGAACGTTGCTTCATGTGGATGGGTGGTTTCCGCCCATCAGAGGTCATCAAGgtac-----tctaatcctcaacacattaccaatatttatatttgccctcaagcac--ccaagcccta-gttatgaaaaaataaaaccctagctccaaaacacccaact
upper sequence: GLYMA02G30090.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ18699 (Selaginella moellendorffii), 5'ss of exon 1
CAAAACCGACGTATTCCACCTTGTTTTTGGCGTGTGGAAGACCCCAGCCGAACGTTGCTTTATGTGGATTGGTGGCTTCAGGCCATCTGAACTCATCAAGgtatata--tatgtaaattctaacgtgtcccacttaattttttatatcaacaaatat-tactaattaatatgtcatgttagtaaaaaatttaatcttataatc
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GAAAGCCGATGTCTTCCACCTCGTCTCTGGGATGTGGAAAACTCCCGCCGAGAGGTGTTTTATGTGGATGGGTGGCTTCAGGCCATCAGAACTTCTCAAGgtacttggtctttcagtttttttcttagcttgagtcttcgtttccatcgttttccatatactgatcgatg-gttttgtttgtctccag---------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|120492828|gb|EH220995.1|EH220995EST: AACGTTGCTTTATGTGGATTGGTGGCTTCAGGCCATCTGAACTCATCAAG ATAATTCTGGGTCAAATTGAGCCTCTTACGGAGCAACAAATACTTGGGATA
genomic: AACGTTGCTTTATGTGGATTGGTGGCTTCAGGCCATCTGAACTCATCAAGgtatatatat ... ttaattatagATAATTCTGGGTCAAATTGAGCCTCTTACGGAGCAACAAATACTTGGGATA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAAAACCGACGTATTCCACCTTGTTTTTGGCGTGTGGAAGACCCCAGCCGAACGTTGCTTTATGTGGATTGGTGGCTTCAGGCCATCTGAACTCATCAAGgtatatatatgtaaattctaacgtgtcccacttaattttttatatcaacaaatattactaattaatatgtcatgttagtaaaaaatttaatcttataatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtaaaaaa