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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTGGTGTTGGGCACATGCGTGACACCAAGACAAAAGgtagatagaaattaccatctttctcgtggatatgcttaattggatataatattttatagtatattttttaatcttttggttcacatcttcag

Basic information

species Glycine max
transcript GLYMA02G16130.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G16130.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G38840.1 (Arabidopsis thaliana), 5'ss of exon 4
GGTTTGGTGTTGGGCACATGCGTGACACCAAGACAAAAGgtaga-----------tagaa---attaccatctttctcgtggatatgcttaattggatataata----ttttatagtatattttttaatct-tttggttcacatcttcag
| ||||||||||| ||||||||||| ||||| |||||||||| |           ||||    | |||||||||||   || ||||   || ||  |  |||||    ||| |   | |  ||   ||||   ||  ||      | |||
GTTTTGGTGTTGGACACATGCGTGATACCAAAACAAAAGgtatagcaataatgtctagaggacactaccatctttcaactgcatatatatatttctagctaataaaggtttaactttttggttcggaatccacttcattgttgcatacag

upper sequence: GLYMA02G16130.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0141g00110.t01 (Vitis vinifera), 5'ss of exon 4
GGTTTGGTGTTGGGCACATGCGTGACACCAAGACAAAAGgtagatagaaa-ttaccatctttctcgtggatatgcttaattg--gatataatattttatagtatatttt-ttaatcttttggttcacatcttcag---------------------
| ||||| || |||||||||||||||||||| ||||||||||||   |   |||  || ||    |||||| ||   || ||  ||| |  | |||| |  |  || |   |  |  ||| | | |  | |  |                      
GATTTGGCGTGGGGCACATGCGTGACACCAAAACAAAAGgtagaagcagggttaagatatt----gtggatgtgtgcaactgttgatttttttttttttttttgatgtggctgttgattttgataatgtttataatgtgttctttttttcttacag