1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTACATTGCCTTGGAGTTTGCTGGTATCTTTAATGGTTTGAAAAGTGAGGTTCATGTATTTATACGGCAAAAGAAGGTTTTGCGGGGATTTGATGAAGAGgtatgcaaccatggatgatacaaatattgaattgttacagcttaataaattttcttcacgttcaaattgtgaactatgtctgcag
species | Glycine max |
transcript | GLYMA02G16010.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTCATGTATTTATACGGCAAAAGAAGGTTTTGCGGGGATTTGATGAAGAG ATTAGAGATTTTGTTGAAGAACAAATGTCTGTAAGAGGTATTGAATTCCATEST: gi|19346748|gb|BM891628.1|BM891628
genomic: TTCATGTATTTATACGGCAAAAGAAGGTTTTGCGGGGATTTGATGAAGAGgtatgcaacc ... atgtctgcagATTAGAGATTTTGTTGAAGAACAAATGTCTGTAAGAGGTATTGAATTCCAT
EST: TTCATGTATTTATACGGCAAAAGAAGGTTTTGCGGGGATTTGATGAAGAG ATTAGAGATTTTGTTGAAGAACAAATGTCTGTAAGAGGTATTGAATTCCATEST: gi|151396456|gb|EV266333.1|EV266333
genomic: TTCATGTATTTATACGGCAAAAGAAGGTTTTGCGGGGATTTGATGAAGAGgtatgcaacc ... atgtctgcagATTAGAGATTTTGTTGAAGAACAAATGTCTGTAAGAGGTATTGAATTCCAT
EST: TTCATGTATTTATACGGCAAAAGAAGGTTTTGCGGGGATTTGATGAAGAG ATTAGAGATTTTGTTGAAGAACAAATGTCTGTAAGAGGTATTGAATTCCATEST: gi|37995669|gb|CF807258.1|CF807258
genomic: TTCATGTATTTATACGGCAAAAGAAGGTTTTGCGGGGATTTGATGAAGAGgtatgcaacc ... atgtctgcagATTAGAGATTTTGTTGAAGAACAAATGTCTGTAAGAGGTATTGAATTCCAT
EST: TTTTGCGGGGATTTGATGAAGAG ATTAGAGATTTTGTTGAAGAACAAATGTCTGTAAGAGGTATTGAATTCCATEST: gi|10231243|gb|BE800059.1|BE800059
genomic: TTTTGCGGGGATTTGATGAAGAGgtatgcaacc ... atgtctgcagATTAGAGATTTTGTTGAAGAACAAATGTCTGTAAGAGGTATTGAATTCCAT
EST: TTCATGTATTTATACGGCAAAAGAAGGTTTTGCGGGGATTTGATGAAGAG ATTAGAGATTTTGTTGAAGAACAAATGTCTGTAAGAGGTATTGAATACCATEST: gi|208040308|gb|GD842088.1|GD842088
genomic: TTCATGTATTTATACGGCAAAAGAAGGTTTTGCGGGGATTTGATGAAGAGgtatgcaacc ... atgtctgcagATTAGAGATTTTGTTGAAGAACAAATGTCTGTAAGAGGTATTGAATTCCAT
EST: TTCATGTATTTATACGGCAAAAGAAGGTTTTGCGGGGATTTGATGAAGAG ATTAGAGATTTTGTTGAAGAACAAATGTCTGTAAGAGGTATTGAATTCCATEST: gi|193388603|gb|FK357492.1|FK357492
genomic: TTCATGTATTTATACGGCAAAAGAAGGTTTTGCGGGGATTTGATGAAGAGgtatgcaacc ... atgtctgcagATTAGAGATTTTGTTGAAGAACAAATGTCTGTAAGAGGTATTGAATTCCAT
EST: TTCATGTATTTATACGGCAAAAGAAGGTTTTGCGGGGATTTGATGAAGAG ATTAGAGATTTTGTTGAAGAACAAATGTCTGTAAGAGGTATTGAATTCCATEST: gi|208139046|gb|GD938582.1|GD938582
genomic: TTCATGTATTTATACGGCAAAAGAAGGTTTTGCGGGGATTTGATGAAGAGgtatgcaacc ... atgtctgcagATTAGAGATTTTGTTGAAGAACAAATGTCTGTAAGAGGTATTGAATTCCAT
EST: TTCATGTATTTATACGGCAAAAGAAGGTTTTGCGGGGATTTGATGAAGAG ATTAGAGATTTTGTTGAAGAACAAATGTCTGTAAGAGGTATTGAATTCCATEST: gi|17022528|gb|BM093562.1|BM093562
genomic: TTCATGTATTTATACGGCAAAAGAAGGTTTTGCGGGGATTTGATGAAGAGgtatgcaacc ... atgtctgcagATTAGAGATTTTGTTGAAGAACAAATGTCTGTAAGAGGTATTGAATTCCAT
EST: TTCATGTATTTATACGGCAAAAGAAGGTTTTGCGGGGATTTGATGAAGAG ATTAGAGATTTTGTTGAAGAACAAATGTCTGTAAGAGGTATTGAATTCCATEST: gi|254323695|gb|GR836034.1|GR836034
genomic: TTCATGTATTTATACGGCAAAAGAAGGTTTTGCGGGGATTTGATGAAGAGgtatgcaacc ... atgtctgcagATTAGAGATTTTGTTGAAGAACAAATGTCTGTAAGAGGTATTGAATTCCAT
EST: TTCATGTATTTATACGGCAAAAGAAGGTTTTGCGGGGATTTGATGAAGAG ATTAGAGATTTTGTTGAAGAACAAATGTCTGTAAGAGGTATTGAATTCCATEST: gi|208065242|gb|GD862150.1|GD862150
genomic: TTCATGTATTTATACGGCAAAAGAAGGTTTTGCGGGGATTTGATGAAGAGgtatgcaacc ... atgtctgcagATTAGAGATTTTGTTGAAGAACAAATGTCTGTAAGAGGTATTGAATTCCAT
EST: ATTTATACGGCAAAAGAAGGTTTTGCGGGGATTTGATGAAGAG ATTAGAGATTTTGTTGAAGAACAAATGTCTGTAAGAGGTATTGAATTCCATEST: gi|192318301|gb|FK005805.1|FK005805
genomic: ATTTATACGGCAAAAGAAGGTTTTGCGGGGATTTGATGAAGAGgtatgcaacc ... atgtctgcagATTAGAGATTTTGTTGAAGAACAAATGTCTGTAAGAGGTATTGAATTCCAT
EST: TTCATGTATTTATACGGCAAAAGAAGGTTTTGCGGGGATTTGATGAAGAG ATTAGAGATTTTGTTGAAGAACAAATGTCTGTAAGAGGTATTGAATTCCAT
genomic: TTCATGTATTTATACGGCAAAAGAAGGTTTTGCGGGGATTTGATGAAGAGgtatgcaacc ... atgtctgcagATTAGAGATTTTGTTGAAGAACAAATGTCTGTAAGAGGTATTGAATTCCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTACATTGCCTTGGAGTTTGCTGGTATCTTTAATGGTTTGAAAAGTGAGGTTCATGTATTTATACGGCAAAAGAAGGTTTTGCGGGGATTTGATGAAGAGgtatgcaaccatggatgatacaaatattgaattgttacagcttaataaattttcttcacgttcaaattgtgaactatgtctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA