1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AAACAAGATTACAAAATGGCTCTAAGGAAGTATCGGAAGGCTTTACGCTACCTGGATATTTGTTGGGAGAAGGAAGGCATTGATGAAGgtatgctgcctttcacaactatttatttcacttaattgtgcaatgcagtggttttgccaaaactgactcacctactttgatcataataatgtattatcatatatattatgcctttgcag
species | Glycine max |
transcript | GLYMA02G15250.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCTTTACGCTACCTGGATATTTGTTGGGAGAAGGAAGGCA-TGAATGAAG AGATAAGTTCAGTTTTGAGAAAAACGAAGTCTCAGATTTTTACAAACAGCEST: gi|7233363|gb|AW568710.1|AW568710
genomic: GCTTTACGCTACCTGGATATTTGTTGGGAGAAGGAAGGCATTG-ATGAAGgtatgctgcc ... gcctttgcagAGATAAGTTCAGGTTTGAGAAAAACGAAGTCTCAGATTTTTACAAACAGC
EST: GGCTTTACGCTACCTGGATATTTGTTGGGAGAAGGAAGGCATTGATGAAG AGATAAGTTCAGGTTTGAGAAAAACGAAGTCTCAGATTTTTACAAACAGCTEST: gi|57575694|gb|CX548669.1|CX548669
genomic: GGCTTTACGCTACCTGGATATTTGTTGGGAGAAGGAAGGCATTGATGAAGgtatgctgcc ... gcctttgcagAGATAAGTTCAGGTTTGAGAAAAACGAAGTCTCAGATTTTTACAAACAGCT
EST: GGCTTTACGCTACCTGGATATTTGTTGGGAGAAGGAAGGCATTGATGAAG AGATAAGTTCAGGTTTGAGAAAAACGAAGTCTCAGATTTTTACAAACAGCT
genomic: GGCTTTACGCTACCTGGATATTTGTTGGGAGAAGGAAGGCATTGATGAAGgtatgctgcc ... gcctttgcagAGATAAGTTCAGGTTTGAGAAAAACGAAGTCTCAGATTTTTACAAACAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACAAGATTACAAAATGGCTCTAAGGAAGTATCGGAAGGCTTTACGCTACCTGGATATTTGTTGGGAGAAGGAAGGCATTGATGAAGgtatgctgcctttcacaactatttatttcacttaattgtgcaatgcagtggttttgccaaaactgactcacctactttgatcataataatgtattatcatatatattatgcctttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA