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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTATGACACATTACTCCAGAATCTGCACGATTTAAAGGAAGGAAAGCCAGTTCAAGTTCCGATATATGATTTCAAGTCCAGTTCACGTACAGGATACAGgttaaattttaagtcatcttgactcttgagtaactacacaatttggtatattttgaggagttgaaaaattgttctcttgggacagtgatcagggaacact...

Basic information

species Glycine max
transcript GLYMA02G14110.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G14110.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G147430_T02 (Zea mays), 5'ss of exon 3
ACTATGACACATTACTCCAGAATCTGCACGATTTAAAGGAAGGAAAGCCAGTTCAAGTTCCGATATATGATTTCAAGTCCAGTTCACGTACAGGATACAGgttaaattttaa-gtcatcttg-actcttgagtaactacacaatttggtatattttgaggagttga----aaaattgttctcttgggacagtgatcagggaacact
||||||||||| | ||  | ||| | || | | | |||||||||| | ||||||| ||||| ||||||||||||||||| || |  || || || || |||| || | | |  |  |||||  | | ||       ||  |  |  |||  || |||     || |    || ||  |  | |       |  | |||        
ACTATGACACACTGCTGGAAAATATACATGGTCTGAAGGAAGGAAGGTCAGTTCAGGTTCCAATATATGATTTCAAGTCAAGCTGCCGGACTGGTTATAGgtaaattatcactgctatctttcaatattacaagcttaagccttaaggtccatattgcatcattcatttgaatatcataatttcttatgtgcaaacag--------

upper sequence: GLYMA02G14110.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G26190.1 (Arabidopsis thaliana), 5'ss of exon 3
ACTATGACACATTACTCCAGAATCTGCACGATTTAAAGGAAGGAAAGCCAGTTCAAGTTCCGATATATGATTTCAAGTCCAGTTCACGTACAGGATACAGgttaaattttaagtcatcttg-actcttgagtaactacacaatttggtatattttgaggagttgaaa-aattgttctcttgg-gacagtgatcagggaacact------------------------------------------------------------------------------
||||||||||||| ||| |||||||  | || ||||||||||||||||  ||| | ||||| || |||||||| |||||||| || |||   |||||||||| |    | | || ||  || | | |  | | |||     | |    || || |      |  ||| ||     | ||||| | |  |  |||   ||   |                                                                              
ACTATGACACATTGCTCAAGAATCTTGAAGACTTAAAGGAAGGAAAGCAGGTTGAGGTTCCTATTTATGATTTTAAGTCCAGCTCTCGTGTTGGATACAGgtaatgcgtgacgtgattgtgcagtttccatttactgattcagtcatcattttgtactttatctaaacaaacaaccacttggtgtccattgtcacaaaagtttgatattacattcacatcagcatggtttctgtttattccactgaagcattgtttttaatgccatgatttaatttgctag

upper sequence: GLYMA02G14110.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv01s0010g01080.t01 (Vitis vinifera), 5'ss of exon 2
ACTATGACACATTACTCCAGAATCTGCACGATTTAAAGGAAGGAAAGCCAGTTCAAGTTCCGATATATGATTTCAAGTCCAGTTCACGTACAGGATACAGgttaaattttaagtcatcttg-actcttgagtaactacacaatttggtatattttgaggagttgaaaaattgttctcttgggacagtgatcagggaacact----
||||||| ||||| ||||||||| | || ||| | ||||  |||||||  |||||  |||| || |||||||||||||| || || || |||||||||||||| |||       |||||   ||   |  |||| |      ||| | |   | |  ||  || ||  ||       |||  | || || ||  |||| |     
ACTATGATACATTGCTCCAGAATGTCCATGATCTGAAGGCTGGAAAGCAGGTTCAGATTCCAATTTATGATTTCAAGTCTAGCTCCCGCACAGGATACAGgttgaatacctctccatctaatacctctttgtaattct----tttagaaagctattggggattaaatcatctcagggttgcaaaag-gaacaacgaacccaaaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209718631|gb|BW674744.1|BW674744
EST:     GTTCAAGTTCCGATATATGATTTCAAGTCCAGTTCACGTACAGGATACAG                         GACAGTAGAAGTCCCGAGTTCTCNGA-TTGTGATTATAGAGGGCATCTATG
genomic: GTTCAAGTTCCGATATATGATTTCAAGTCCAGTTCACGTACAGGATACAGgttaaatttt ... ctgcttacagGACAGTAGAAGTCCCGAGTTCTC-GAATTGTGATTATAGAGGGCATCTATG