1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTGGTTGCTTTTTGATTGCTGTTTGTCTAGGTTCTGCTGTTCATTCATCTAACACAGTTGACAATAAGGCCAAGCTCAGTGATTACAAAGATGCAGCTAAgtatgtgttgtttgtttacagataatttgggatatgacagttgaacattgtagatactccccctccaaaaggtttaattaattccctatagttgcacaaa...
species | Glycine max |
transcript | GLYMA02G12980.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AACACAGTTGACAATAAGGCCAAGCTCAGTGATTACAAAGATGCAGCTAA GAGCACTAGTGTAACCACTTTTAAEST: gi|254324736|gb|GR834161.1|GR834161
genomic: AACACAGTTGACAATAAGGCCAAGCTCAGTGATTACAAAGATGCAGCTAAgtatgtgttg ... ctcttttcagGGGCACTAGTGTAACCACTTTTAA
EST: ACACAGTTGACAATAAAGGCCAAGCTCAGTGATTACAAAGATGCAGCTAA GGGCACTAGTGTAACCACTTTTAAAGAAACAAGTGAAGEST: gi|254348161|gb|GR851840.1|GR851840
genomic: ACACAGTTGACAATAA-GGCCAAGCTCAGTGATTACAAAGATGCAGCTAAgtatgtgttg ... ctcttttcagGGGCACTAGTGTAACCACTTTTAAAGAAACAAGTGAAG
EST: AACACAGTTGACAATAAGGCCAAGCTCAGTGATTACAAAGATGCAGCTAA GGGCACTAGTGTAACCACTTTTAAAGAAACAAGTGAAG
genomic: AACACAGTTGACAATAAGGCCAAGCTCAGTGATTACAAAGATGCAGCTAAgtatgtgttg ... ctcttttcagGGGCACTAGTGTAACCACTTTTAAAGAAACAAGTGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGTTGCTTTTTGATTGCTGTTTGTCTAGGTTCTGCTGTTCATTCATCTAACACAGTTGACAATAAGGCCAAGCTCAGTGATTACAAAGATGCAGCTAAgtatgtgttgtttgtttacagataatttgggatatgacagttgaacattgtagatactccccctccaaaaggtttaattaattccctatagttgcacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccccc