1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGGAACTCTCCAAAATCTGTGGTGACATTCTGACTATTATAGACCAGCATTTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGATgtgagtcatgttgctaccttgctgtgctacttgcttgatgaattcaattcatttcctggttctttcagtgattaccattatctccatattctttttttga...
species | Glycine max |
transcript | GLYMA02G12930.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGAT GAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAGEST: gi|10843368|gb|BF067173.1|BF067173
genomic: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGATgtgagtcatg ... tttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAG
EST: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGAT GAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAGEST: gi|14011701|gb|BG726623.1|BG726623
genomic: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGATgtgagtcatg ... tttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAG
EST: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGAT GAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAGEST: gi|18690824|gb|BM519672.1|BM519672
genomic: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGATgtgagtcatg ... tttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAG
EST: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGAT GAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAGEST: gi|21887789|gb|BQ741002.1|BQ741002
genomic: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGATgtgagtcatg ... tttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAG
EST: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGAT GAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAGEST: gi|4306793|gb|AI443955.1|AI443955
genomic: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGATgtgagtcatg ... tttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAG
EST: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGAT GAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAGEST: gi|208081589|gb|GD882047.1|GD882047
genomic: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGATgtgagtcatg ... tttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAG
EST: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGAT GAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAGEST: gi|7924046|gb|AW830054.1|AW830054
genomic: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGATgtgagtcatg ... tttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAG
EST: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGAT GAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAGEST: gi|57574121|gb|CX547096.1|CX547096
genomic: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGATgtgagtcatg ... tttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAG
EST: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGAT GAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAG
genomic: TTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGATgtgagtcatg ... tttgatccagGAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAACTCTCCAAAATCTGTGGTGACATTCTGACTATTATAGACCAGCATTTGATTCCTTCTTCCGGATCAGCAGAAGCTAGCGTTTTCTACTACAAGATgtgagtcatgttgctaccttgctgtgctacttgcttgatgaattcaattcatttcctggttctttcagtgattaccattatctccatattctttttttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC