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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTACAGGTTAAATCTTCTCCACCTGTCCAGCCTACTCCACAAGTCAACAATGACCCAGCTATTATTCAGgtggatgagaaaattgttgtctgaattaagaaccagttaaattaatcacatcctaattatatgaaattgcatatgcag

Basic information

species Glycine max
transcript GLYMA02G11320.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G11320.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv01s0011g02820.t01 (Vitis vinifera), 5'ss of exon 3
GATTTACAGGTTAAATCTTCTCCACCTGTCCAGCCTACTCCACAAGTCAACAATGACCCAGCTATTATTCAGgtggatgagaaaat----------tgttgtctgaattaagaaccag-ttaaattaatcacatcct-aattatatgaaattgcatatgcag
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GATTTGCAGGTTAAGTCTTCACCTCCTGTTCAGGCTACACCACCTATAAACAATGACCCTGCTATTATTCAGgtggataaaaggatgacccaccttttttatatatgtgatgcatcaaatcaagtaaacttgattctgaattaaccttaatttcttatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26058869|gb|CA801783.1|CA801783
EST:     CACCTGTCCAGCCTACTCCACAAGTCAACAATGACCCAGCTATTATTCAG                         TCTCACTATCCTTTCCCGGTGACCACATCTACAAGTTTGCCTTCTGCTGTA
genomic: CACCTGTCCAGCCTACTCCACAAGTCAACAATGACCCAGCTATTATTCAGgtggatgaga ... gcatatgcagTCTCACTATCCTTTCCCGGTGACCACATCTACAAGTTTGCCTTCTGCTGTA