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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTACAGGTTAAATCTTCTCCACCTGTCCAGCCTACTCCACAAGTCAACAATGACCCAGCTATTATTCAGgtggatgagaaaatatttatctgaattatgaatcagttaaattaaccacatcctaattatatggaattgcatatgcag

Basic information

species Glycine max
transcript GLYMA02G11300.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G11300.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv01s0011g02820.t01 (Vitis vinifera), 5'ss of exon 3
GATTTACAGGTTAAATCTTCTCCACCTGTCCAGCCTACTCCACAAGTCAACAATGACCCAGCTATTATTCAGgtggatgagaaaata----------tttatctgaattatgaatcag-ttaaattaaccacatcct-aattatatggaattgcatatgcag
||||| |||||||| ||||| || ||||| ||| |||| ||||   | ||||||||||| |||||||||||||||||| | |  ||           ||||| |   | ||| ||||  | || | |||   || || |||||     |||| | |||||||
GATTTGCAGGTTAAGTCTTCACCTCCTGTTCAGGCTACACCACCTATAAACAATGACCCTGCTATTATTCAGgtggataaaaggatgacccaccttttttatatatgtgatgcatcaaatcaagtaaacttgattctgaattaaccttaatttcttatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6502262|gb|AW203635.1|AW203635
EST:     CACCTGTCCAGCCTACTCCACAAGTCAACAATGACCCAGCTATTATTCAG                         TCTCACTATCCTTACCCGGTGACCACATCTACAAGTTTGCCTTCTGCTG
genomic: CACCTGTCCAGCCTACTCCACAAGTCAACAATGACCCAGCTATTATTCAGgtggatgaga ... gcatatgcagTCTCACTATCCTTACCCGGTGACCACATCTACAAGTTTGCCTTCTGCTG
EST: gi|209697514|gb|BW670015.1|BW670015
EST:     CACCTGTCCAGCCTACTCCACAAGTCAACAATGACCCAGCTATTATTCAG                         TCTCACTATCCTTACCCGGTGACCACATCTACAAGTTTGCCTTCTGCTGTA
genomic: CACCTGTCCAGCCTACTCCACAAGTCAACAATGACCCAGCTATTATTCAGgtggatgaga ... gcatatgcagTCTCACTATCCTTACCCGGTGACCACATCTACAAGTTTGCCTTCTGCTGTA