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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGGTAACATAGCTGATTCATCCACTGAGTTATACACAGAGCTGGCAATATTACTGTCCCTTATGGTTGGGATAATGGAGTGCATAATGGGACTCTTGAGgtattttcatcaacatagatataccttcttaacttggctaagaatccatgcatgaaagtttctgtccctgttctttctctttcacgaatctaatactcta...

Basic information

species Glycine max
transcript GLYMA02G10590.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G10590.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0019g00010.t01 (Vitis vinifera), 5'ss of exon 3
TAGGTAACATAGCTGATTCATCCACTGAGTTATACACAGAGCTGGCAATATTACTGTCCCTTATGGTTGGGATAATGGAGTGCATAATGGGACTCTTGAGgtattttcatcaacatagatataccttcttaacttggctaagaatccat-gcatgaaagtttctgtccctgttctttctct-----ttcacgaatctaatactcta-
|| |||| || | |||||||||   |||  ||||||| || || |||||| |  || | ||||||||||| |||||||| ||||||||||| ||| ||||||| || ||  ||        |  |||||| |  |||  ||   | |||    | |  | ||||     ||   ||  | |      |   |||  |  || | || 
TAAGTAAAATTGTTGATTCATCTGATGAACTATACACGGAACTAGCAATACTTTTGGCGCTTATGGTTGGCATAATGGAATGCATAATGGGGCTCCTGAGgtacttccactaatcc-----tctcttcttca--tggaaaaacttgcatcatgtaaggggttctaaagttgagtttgttataatgtcttttgaaatttctattttaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254320748|gb|GR827197.1|GR827197
EST:     TTACTGTCCCTTATGGTTGGGATAATGGAGTGCATAATGGGACTCTTGAG                         GCTTGGATGGCTTATTCGTTTCATTAGCCATTCAGTGATATCTGGCTTTAC
genomic: TTACTGTCCCTTATGGTTGGGATAATGGAGTGCATAATGGGACTCTTGAGgtattttcat ... gtcatttcagGCTTGGATGGCTTATTCGTTTCATTAGCCATTCAGTGATATCTGGCTTTAC
EST: gi|254333563|gb|GR848481.1|GR848481
EST:     GTGCATAATGGGACTCTTGAG                         GCTTGGATGGCTTATTCGTTTCATTAGCCATTCAGTGATATCTGGCTTTAC
genomic: GTGCATAATGGGACTCTTGAGgtattttcat ... gtcatttcagGCTTGGATGGCTTATTCGTTTCATTAGCCATTCAGTGATATCTGGCTTTAC