Sequence
atgc intronic sequence ATGC exonic sequenceAATATATGGATTTGCATCTGGTGGCCCTTTACGGTTCAAAAGAGCTGTTGGACACAGAGACTTGTTTTATATTGATGACAAGGATGTAGATTTAAAAGATgtaagggggtgctcaatcattttcacttactcccgtcaattggatttaaacttcaagtgcattacctcgttaaaattatagtttgtgttaatcatag
Basic information
species | Glycine max |
transcript | GLYMA02G10220.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G10220.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g32750.1 (Oryza sativa), 5'ss of exon 3
AATATATGGATTTGCATCTGGTGGCCCTTTACGGTTCAAAAGAGCTGTTGGACACAGAGACTTGTTTTATATTGATGACAAGGATGTAGATTTAAAAGATgtaagggggtgctcaatcatt---ttcacttactcccg---tcaattggatttaaacttcaagtgcattacctcgttaaaattatagtttgtgttaatcatag
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TGTATATGGATTTGCTTCCGGTGACCCCTTGCGGTTTAAGAGAGCTGTGGGACACAAGGATCTCTTCTATATTGATGACAGGGAGGTAGACTTCAAAGAGgtaggggctctactaatggatgaatcaaataacttttgtacttattttattatagggatcaatttgaaaattttcttattcattggctctgtgcag-------
upper sequence: GLYMA02G10220.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv12s0059g00300.t01 (Vitis vinifera), 5'ss of exon 3
AATATATGGATTTGCATCTGGTGGCCCTTTACGGTTCAAAAGAGCTGTTGGACACAGAGACTTGTTTTATATTGATGACAAGGATGTAGATTTAAAAGATgtaagggggtgctcaatcattttcacttactcccgtcaattggatttaaacttcaagtgcattacctcgttaaaattatagtttgtgttaatcatag
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AATTTATGGCTTTACCTCGGGAGGTCCGCTGCGGTTCAAAAGAGCTGTTGGACATAAGAATTTGTTTTACATCGATGACAAGGATTTGGATTTCAAAGATgtaagtgattg-tcaattgtgttaattg--tctgaacaa--aattttctggatcatattccatgtcttcagagatttgtttgacatgtag-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209716202|gb|BW654250.1|BW654250EST: GACACAGAGACTTGTTTTATATTGATGACAAGGATGTAGATTTAAAAGAT GTTATTGAAGCTTCTTTACCAAAGGCACCCCTTGATACTGCAGTTACATGC
genomic: GACACAGAGACTTGTTTTATATTGATGACAAGGATGTAGATTTAAAAGATgtaagggggt ... ttaatcatagGTTATTGAAGCTTCTTTACCAAAGGCACCCCTTGATACTGCAGTTACATGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATATATGGATTTGCATCTGGTGGCCCTTTACGGTTCAAAAGAGCTGTTGGACACAGAGACTTGTTTTATATTGATGACAAGGATGTAGATTTAAAAGATgtaagggggtgctcaatcattttcacttactcccgtcaattggatttaaacttcaagtgcattacctcgttaaaattatagtttgtgttaatcatag
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