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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAGAATTATTGAGAAGTGAATACACCCATTTCCTTGTTACAGGAGATGTTTACCGTAGGGATTCAATTGATTCAACTCATTATCCTGTCTTCCATCAAgtatgtccccatatgcagtaactggcttaatctaataatagtcaactttatataatttcatcttttttattatgtag

Basic information

species Glycine max
transcript GLYMA02G10060.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G10060.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os12g34860.1 (Oryza sativa), 5'ss of exon 3
GGCAGAATTATTGAGAAGTGAATACACCCATTTCCTTGTTACAGGAGATGTTTACCGTAGGGATTCAATTGATTCAACTCATTATCCTGTCTTCCATCAAgtatgtccccatatgcagtaactggcttaatctaataatagtcaactttatataatttcatcttttttattatgtag
 |||||  |  | ||   || | |||| ||||||||||| || || |||||||| ||||||||||| |||||||||||||| ||||||  ||||||||| |||  |      | ||  || |      ||| |    | ||  |  ||| | |   |  || |||| ||  ||| ||
AGCAGAGCTGCTAAGGGATGGACACACACATTTCCTTGTAACTGGGGATGTTTATCGTAGGGATTCTATTGATTCAACTCACTATCCTTGCTTCCATCAGgtaaatgta---acgccatatcacttgaaatatttccaaagaaaggtttgtgttgatg-attttttgtac-atgcag

upper sequence: GLYMA02G10060.1 (Glycine max), 5'ss of exon 3
lower sequence: AC211349.4_FGT001 (Zea mays), 5'ss of exon 3
GGCAGAATTATTGAGAAGTGAATACACCCATTTCCTTGTTACAGGAGATGTTTACCGTAGGGATTCAATTGATTCAACTCATTATCCTGTCTTCCATCAAgta------tgtccccatatgcagtaactggcttaatc--taataatagtc-aactttatat-------------aatttcatcttttttattatgtag-
 || ||  |  | ||   || | | || || || ||||| || ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||      | |  |||| | || | |  | |||  ||  | | |  | || | || |  ||             ||||  |||  | |||  ||  |  
AGCTGAGCTGCTAAGGCATGGACATACACACTTTCTTGTAACTGGAGATGTTTACCGTAGGGATTCCATTGATTCAACTCACTATCCTGTCTTCCATCAGgtaactttatttttccatgttcacttaaggtctttttcgtttacaccaatccagctctggattagcatagattagaattaaatccatgttacaatccatg

upper sequence: GLYMA02G10060.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G078756_T01 (Zea mays), 5'ss of exon 3
GGCAGAATTATTGAGAAGTGAATACACCCATTTCCTTGTTACAGGAGATGTTTACCGTAGGGATTCAATTGATTCAACTCATTATCCTGTCTTCCATCAAgtatgtccccatatgcagtaactggcttaatctaataatagtcaactttatataatttcatcttttttattatgtag
 || ||  |  | ||   || |   || || || ||||| || ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||  |     | ||| |||      | ||| |  |  || | |  ||| | |   |  ||||||   |  ||||||
AGCTGAGCTGCTAAGGGATGGACGTACACACTTTCTTGTAACTGGAGATGTTTACCGTAGGGATTCCATTGATTCAACTCACTATCCTGTCTTCCATCAGgtacttttgttt-tgccgtactcacttaaattttct--taatgaggtttgttttggta-atctttaacac-atgtag

upper sequence: GLYMA02G10060.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G58140.1 (Arabidopsis thaliana), 5'ss of exon 3
GGCAGAATTATTGAGAAGTGAATACACCCATTTCCTTGTTACAGGAGATGTTTACCGTAGGGATTCAATTGATTCAACTCATTATCCTGTCTTCCATCAAgtatgtccccatatgcagtaactggcttaatctaataata-gtcaactttat---ataatttcatcttttttattatgtag-----
 || ||  | ||||| |  |   | |  | ||||||||| || || ||||||||||| || ||||| ||||| || ||||||||||| || |||||||| || | ||      ||  ||  |||  ||  |||  || |  | |   |||     | |  |  ||  | ||| |||| ||      
AGCTGAGCTGTTGAGGAAAGGTCATAGTCGTTTCCTTGTAACCGGGGATGTTTACCGAAGAGATTCTATTGACTCTACTCATTATCCGGTTTTCCATCAGgtgt-tctattcttgaggtccctgtgtttttcttttactttggctgttttgctcgacaggtgtattatgttttttatctattacag

upper sequence: GLYMA02G10060.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv19s0027g01150.t01 (Vitis vinifera), 5'ss of exon 4
GGCAGAATTATTGAGAAGTGAATACACCCATTTCCTTGTTACAGGAGATGTTTACCGTAGGGATTCAATTGATTCAACTCATTATCCTGTCTTCCATCAAgtat---gtccccatatgcagtaactggcttaatctaataatag-----tcaac--tttatataatttcat-------cttttttattatgtag
 |||||  | ||||| || | | |||| ||||||||||| || ||||||||||| ||||| ||||| |||||||||||||| || ||||| || ||||| || |    || |    |  |  ||      |  |||| ||| |      | |||  ||| |  | ||  ||       |||  | || ||| ||
AGCAGAGCTGTTGAGGAGGGGACACACTCATTTCCTTGTGACTGGAGATGTTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatctctgattttatcaatgattattttctattaacaagtttcttaacgttttcttcagttcaataactttgcttcctgatcatgcag

upper sequence: GLYMA02G10060.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv11s0103g00120.t01 (Vitis vinifera), 5'ss of exon 3
GGCAGAATTATTGAGAAGTGAATACACCCATTTCCTTGTTACAGGAGATGTTTACCGTAGGGATTCAATTGATTCAACTCATTATCCTGTCTTCCATCAAgtat---gtcccca---tatgcagtaactggctt---------aatctaataatagtcaactttatataatttcat--cttttttattatgtag
 |||||  | ||||| || | | |||| ||||||||||| || ||||||||||| ||||| ||||| |||||||||||||| || ||||| || ||||| || |    || |       |||| | | ||  ||         | | |  ||||  |    |   |  |||  | |  |||  | || ||| ||
AGCAGAGCTGTTGAGGAGGGGACACACTCATTTCCTTGTGACTGGAGATGTTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatctctgattcttgcaatgattgttttctattaactagtttcttaatgttttcttcagttcaataactttgcttcctgatcatgcag

upper sequence: GLYMA02G10060.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv19s0027g01380.t01 (Vitis vinifera), 5'ss of exon 3
GGCAGAATTATTGAGAAGTGAATACACCCATTTCCTTGTTACAGGAGATGTTTACCGTAGGGATTCAATTGATTCAACTCATTATCCTGTCTTCCATCAAgtatgtc-cccat-atgcagtaactggct-taatctaataatagtcaactttatataatttcatcttt-----tttattatgtag
 |||||  | ||||| || | | |||| ||||||||||| || ||||||||||| ||||| ||||| |||||||||||||| || | ||| || ||| | || | |   | || ||    | | ||  | |  |||| ||| |     ||| || |  | |    ||       |||| ||| ||
AGCAGAGCTGTTGAGGAGGGGACACACTCATTTCCTTGTGACTGGAGATGTTTATCGTAGAGATTCCATTGATTCAACTCACTACCGTGTTTTTCATTAGgtttcttgtctatgatttgatcaatgattgttttctattaacaagtttcttaatgttttcttcagttcaataacttatcatgcag

upper sequence: GLYMA02G10060.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv19s0027g01220.t01 (Vitis vinifera), 5'ss of exon 3
GGCAGAATTATTGAGAAGTGAATACACCCATTTCCTTGTTACAGGAGATGTTTACCGTAGGGATTCAATTGATTCAACTCATTATCCTGTCTTCCATCAAgtat---gtccccatatgcagtaactggcttaatctaataatagtcaactttatataatttcatcttt-----tttattatgtag
 |||||  ||||||| || | | |||| ||||||||||| || ||||||||||| | ||| ||||| |||||||||||||| || ||||| || ||||| || |    || |    |  |  ||      |  |||| ||| |     ||| || |  | |    ||       |||| ||| ||
AGCAGAGCTATTGAGGAGGGGACACACTCATTTCCTTGTGACTGGAGATGTTTATCCTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatctctgattttatcaatgattgttttctattaacaagtttcttaatgttttcttcagttcaataacttatcatgcag

upper sequence: GLYMA02G10060.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv19s0027g01200.t01 (Vitis vinifera), 5'ss of exon 2
-GGCAGAATTATTGAGAAGTGAATACACCCATTTCCTTGTTACAGGAGATGTTTACCGTAGGGATTCAATTGATTCAACTCATTATCCTGTCTTCCATCAAgtatgtccccatatgcagtaactggcttaatctaataatagtcaactttatataatttcatcttttttattatgtag----------------
  |||||  | ||||| || | | |||| ||||||||||| || ||||||||||| | ||| ||||  |||||||||||||| || ||||| || ||||| || | |            || |     |  | |  || ||   |  ||  |||  |||| ||  ||  || || | |                
AAGCAGAGCTGTTGAGGAGGGGACACACTCATTTCCTTGTGACTGGAGATGTTTATCATAGAGATTTCATTGATTCAACTCACTA-CCTGTTTTTCATCAGgtttcttatttctgattttatcaatgattgttttctattaacaagtttcttatgttttcttcagttcaataattttgcttcctgatcatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22522222|gb|BU081033.1|BU081033
EST:     TTTACCGTAGGGATTCAATTGATTCAACTCATTATCCTGTCTTCCATCAA                         ATGGAAGGCTTTCGGGTTTTTGTTCCAGAAGAATGGGAGGGATCTGGAATG
genomic: TTTACCGTAGGGATTCAATTGATTCAACTCATTATCCTGTCTTCCATCAAgtatgtcccc ... tattatgtagATGGAAGGCTTTCGGGTTTTTGTTCCAGAAGAATGGGAGGGATCTGGAATG