Sequence
atgc intronic sequence ATGC exonic sequenceATTTATGCAGGTTTATTGCCTATAGTGATCTTTGTTGTTGTCTATATTCAAAGGAGAGATGTCTATGATCTTCATCATGCTGTGCTATgtattaaattttaaatacccctcatttatttaattggtagcaagcatattctatttgttgaaacgacactgttggagacaataacaggaaattgtttgctggcacag
Basic information
species | Glycine max |
transcript | GLYMA02G09820.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G09820.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g04660.2 (Oryza sativa), 5'ss of exon 4
ATT-TATGCAGGTTTATTGCCTATAGTGATCTTTGTTGTTGTCTATATTCAAAGGAGAGATGTCTATGATCTTCATCATGCTGTGCTATgtattaaattttaaatacccctcatttatttaattggtagcaagcatattctatttgttgaaacgacactgttggagacaataacaggaaattgtttgctggcacag
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ATAATATCCATAGTT-TGCCCTGTAATTATCTTTCTATCCGTTTATATCGCTAGGAGAGATGTCTATGATCTTCATCACGCAACATTAGgtgattgtcgatgtctccattttcttctgatggttcactacttctgaatacaaagttctgaatttcatataccgagaaactcatcagaatgttaatt-ctgcag---
upper sequence: GLYMA02G09820.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0006g02480.t01 (Vitis vinifera), 5'ss of exon 2
ATTTATGCAGGTTTATTGCCTATAGTGATCTTTGTTGTTGTCTATATTCAAAGGAGAGATGTCTATGATCTTCATCATGCTGTGCTATgtattaaa--ttttaaatacccctcatttattta-attggtagcaagcatattctatttg--ttgaaacgacact-----gttggagacaataacaggaaattgtttgctggcacag
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TTGTATTCAGTTCTGTTGCCTATAACCATTTTTCTCATCATCTATTTTCGTAGGAGAGATGTCTATGATCTTCATCATGCCATCCTAGgtgataagatctttggctcctcatggtttatctgtaataattcctcttgtatgcaataggaattgatgtgttatttgaaagattgaactgatggtttgat-ttatttgctagagcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9259326|gb|BE347403.1|BE347403EST: TGTCTATATTCAAAGGAGAGATGTCTATGATCTTCATCATGCTGTGCTAT GTCTATTGTTCTCCATTTTAATAACCTGAGTATTTACTGAACCCATAAAAA
genomic: TGTCTATATTCAAAGGAGAGATGTCTATGATCTTCATCATGCTGTGCTATgtattaaatt ... gctggcacagGTCTATTGTTCTCCATTTTAATAACCTCAGTATTTACTGAAGCCATAAAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTTATGCAGGTTTATTGCCTATAGTGATCTTTGTTGTTGTCTATATTCAAAGGAGAGATGTCTATGATCTTCATCATGCTGTGCTATgtattaaattttaaatacccctcatttatttaattggtagcaagcatattctatttgttgaaacgacactgttggagacaataacaggaaattgtttgctggcacag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG