1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ATATTTTTCGCCCTTTTGTTGGGTATAGAGAAGTTAGACTTGTGAGCAAAGAATCCAAACATgtaagtttactgtttgtgccagatgcatgcttgtccttttttggttatgtagttgattggtcaaaagttgtagtgtcctctttgtgctgaaatgcttgttcattgcag
species | Glycine max |
transcript | GLYMA02G09230.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTTTTGTTGGGTATAGAGAAGTTAGACTTGTGAGCAAAGAATCCAAACAT CGTGGTGGAGATCCTCATTACCTTTGTTTTGTGGACTTTGCAAATCCAGCTEST: gi|209711714|gb|BW676853.1|BW676853
genomic: CTTTTGTTGGGTATAGAGAAGTTAGACTTGTGAGCAAAGAATCCAAACATgtaagtttac ... ttcattgcagCGTGGTGGAGATCCTCATTACCTTTGTTTTGTGGACTTTGCAAATCCAGCT
EST: CTTTTGTTGGGTATAGAGAAGTTAGACTTGTGAGCAAAGAATCCAAACAT CGTGGTGGAGATCCTCATTACCTTTGTTTTGTGGACTTTGCAAATCCAGCTEST: gi|192303504|gb|FG998598.1|FG998598
genomic: CTTTTGTTGGGTATAGAGAAGTTAGACTTGTGAGCAAAGAATCCAAACATgtaagtttac ... ttcattgcagCGTGGTGGAGATCCTCATTACCTTTGTTTTGTGGACTTTGCAAATCCAGCT
EST: CTTTTGTTGGGTATAGAGAAGTTAGACTTGTGAGCAAAGAATCCAAACAT CGTGGTGGAGATCCTCATTACCTTTGTTTTGTGGACTTTGCAAATCCAGCT
genomic: CTTTTGTTGGGTATAGAGAAGTTAGACTTGTGAGCAAAGAATCCAAACATgtaagtttac ... ttcattgcagCGTGGTGGAGATCCTCATTACCTTTGTTTTGTGGACTTTGCAAATCCAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATTTTTCGCCCTTTTGTTGGGTATAGAGAAGTTAGACTTGTGAGCAAAGAATCCAAACATgtaagtttactgtttgtgccagatgcatgcttgtccttttttggttatgtagttgattggtcaaaagttgtagtgtcctctttgtgctgaaatgcttgttcattgcag
- - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - AAAGAA