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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTACCCTTGCCAGATCTTCTAAAATTTGTTCTCTTTGCTAACTTCTCTATTGTTGGAATGAATGTTAGTCTAATGTGGAACTCAGTTGGATTCTATCAAgtgagttgggctgagctttatctattggttaattcattaatgccttcagaagttatattcactttttagccattgacag

Basic information

species Glycine max
transcript GLYMA02G08700.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G08700.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g40090.4 (Oryza sativa), 5'ss of exon 3
TTTACCCTTGCCAGATCTTCTAAAATTTGTTCTCTTTGCTAACTTCTCTATTGTTGGAATGAATGTTAGTCTAATGTGGAACTCAGTTGGATTCTATCAAgtgagttgggctgagctttatctattggttaattcattaat-gccttcagaagttatattcacttt----ttagccattgacag
|||||| |||||||| ||  | ||||| ||  | ||||| ||||| || |||||||| |||||||||||| | ||||||||||| |||||||||||||| ||| |  | |   |  ||||  |  |  |  ||||| |  | |  |  ||     ||| | | |||    | |  | |   |||
TTTACCATTGCCAGAACTCGTTAAATTCGTCTTTTTTGCAAACTTATCAATTGTTGGGATGAATGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgggaagagt--aattttaaatccttctatattcaatgttagaatggagggcacatactaattttcgtttcatgcctcttcag

upper sequence: GLYMA02G08700.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os05g12490.1 (Oryza sativa), 5'ss of exon 3
TTTACCCTTGCCAGATCTTCTAAAATTTGTTCTCTTTGCTAACTTCTCTATTGTTGGAATGAATGTTAGTCTAATGTGGAACTCAGTTGGATTCTATCAAgtgagttggg---ctgagctttatctattggttaattc-attaatgccttcagaagttatattcacttttta-gccattgacag
 |||||  ||||||| ||  ||||||||||  | ||||| ||| | || |||||||| |||||||||||| | ||||||||||| ||||||||||| || ||||     |   || ||   |   || || | | ||  |  | ||  | || |   || |||  ||  | | ||| ||  |||
CTTACCAGTGCCAGAACTAATAAAATTTGTCTTTTTTGCAAACCTATCAATTGTTGGGATGAATGTTAGTTTGATGTGGAACTCTGTTGGATTCTACCAGgtgaagaaagtaactaagtcct--ttaatgttcacttttagaattggatgcatatacta-atttgctcctcatgcctttttcag

upper sequence: GLYMA02G08700.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM5G823629_T03 (Zea mays), 5'ss of exon 2
TTTACCCTTGCCAGATCTTCTAAAATTTGTTCTCTTTGCTAACTTCTCTATTGTTGGAATGAATGTTAGTCTAATGTGGAACTCAGTTGGATTCTATCAAgtgagttgggctgagctttatctattggttaattcattaatgc----cttcagaagttatattcactttttagccattgacag
|||||| || ||||| ||  |||| ||||   | ||||| ||| | || || || |||||||| |||||| | ||||||||||| |||||||||||||| |||||  ||    | ||||     |   | | |  |||   |     | |    | | ||  |   | | | ||| ||  |||
TTTACCATTACCAGAACTAGTAAAGTTTGCCTTTTTTGCAAACCTGTCGATCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgag--ggcagaaactttggtattctataagtatattggagttaaacgtatatactaatgctgtgtatcttgcccttttcag

upper sequence: GLYMA02G08700.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G089630_T04 (Zea mays), 5'ss of exon 3
TTTACCCTTGCCAGATCTTCTAAAATTTGTTCTCTTTGCTAACTTCTCTATTGTTGGAATGAATGTTAGTCTAATGTGGAACTCAGTTGGATTCTATCAAgtg-agttgggctgagctttat-ctattggttaattcattaatgccttcagaagttatattcactttttagccattgacag
| |||| || || || ||  ||||||| |   | ||||| ||| | ||||||||||| |||||||| ||  | ||||||||||| |||||||||||||| ||| ||   |      |  ||| ||||  ||  ||          |||    | | |   |  || | | ||| ||  |||
TCTACCGTTACCTGAACTAGTAAAATTCGCCTTTTTTGCGAACCTGTCTATTGTTGGGATGAATGTAAGCTTGATGTGGAACTCTGTTGGATTCTATCAGgtgcagacagaaacttcgatattctataagtatatcggaattaaacttgtatactgacgctgtctgtcttgcctttttcag

upper sequence: GLYMA02G08700.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G34020.1 (Arabidopsis thaliana), 5'ss of exon 3
TTTACCCTTGCCAGATCTTCTAAAATTTGTTCTCTTTGCTAACTTCTCTATTGTTGGAATGAATGTTAGTCTAATGTGGAACTCAGTTGGATTCTATCAAgtgagttgggctgagctttatctattggttaattcattaatgcctt-cagaagttat-attcactttttagccattgacag
| | || ||  | || ||| | | |||| |||| |||||||| ||||| ||||||||||||||||| ||||| ||||||||||| ||||| || ||||| || | | |   | | ||   ||| |   |      |  ||||  || | ||  |||| |||  | | ||     ||| |||
TCTTCCGTTTACGGAGCTTTTGAGATTTATTCTGTTTGCTAATTTCTCCATTGTTGGAATGAATGTCAGTCTTATGTGGAACTCTGTTGGTTTTTATCAGgt-attagacatcatctagctctgtaattgtgaaaagaaatgtattgctgattttatgattgtcctgtttttgcttgtcag

upper sequence: GLYMA02G08700.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G09810.1 (Arabidopsis thaliana), 5'ss of exon 3
TTTACCCTTGCCAGATCTTCTAAAATTTGTTCTCTTTGCTAACTTCTCTATTGTTGGAATGAATGTTAGTCTAATGTGGAACTCAGTTGGATTCTATCAAgtgagttgggctgagctttatctattggttaattcattaatgccttcagaagttatattcactttttagccattgacag
| | || ||  |||| ||||| || ||| |||| |||||||| || || ||||||||||||||||||||||| ||||||||||| ||||| || ||||| || | |  |  ||   ||| | |  ||     ||  ||  ||        | |  | |   || |||     || ||||
TCTTCCATTTACAGAGCTTCTTAAGTTTATTCTGTTTGCTAATTTTTCGATTGTTGGAATGAATGTTAGTCTTATGTGGAACTCTGTTGGGTTTTATCAGgtaaatgtgtttgctttttgtgttatgtaacgtttcttgttgttggttctaatggtgtcttctcttttatgcttaacag

upper sequence: GLYMA02G08700.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv18s0072g00080.t01 (Vitis vinifera), 5'ss of exon 2
TTTACCCTTGCCAGATCTTCTAAAATTTGTTCTCTTTGCTAACTTCTCTATTGTTGGAATGAATGTTAGTCTAATGTGGAACTCAGTTGGATTCTATCAAgtgagttg-ggctgagctttatctattggttaa---ttcatt--aatgccttcagaagttatattcactttttagccattgacag
| | ||| | ||||| ||||| ||||||||  | ||||| |||||||||||||||||||||||||||||| |||||||||||||||| || |||||||| ||   ||  |  ||  || | | | |  | | |   || |||  |||   | ||||||||| ||      |||| |  |      
TCTCCCCCTTCCAGAGCTTCTGAAATTTGTATTATTTGCGAACTTCTCTATTGTTGGAATGAATGTTAGTTTAATGTGGAACTCAGTAGGGTTCTATCAGgtatattctgattgctctgtgtgtttaagcttacattttattgtaataattgcagaagttacatctctaatttaactgtcag---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298166844|gb|HO010283.1|HO010283
EST:     TTGTTGGAATGAATGTTAGTCTAATGTGGAACTCAGTTGGATTCTATCAA                         ATTGCGAAGTTAAGTATGATCCCTGTATCATGCCTATTGGAAGTTGTTCTC
genomic: TTGTTGGAATGAATGTTAGTCTAATGTGGAACTCAGTTGGATTCTATCAAgtgagttggg ... ccattgacagATTGCGAAGTTAAGTATGATCCCTGTATCATGCCTATTGGAAGTTGTTCTC
EST: gi|151408897|gb|EV278705.1|EV278705
EST:     TTGTTGGAATGAATGTTAGTCTAATGTGGAACTCAGTTGGATTCTATCAA                         ATTGCGAAGTTAAGTATGATCCCTGTATCATGCCTATTGGAAGTTGTTCTC
genomic: TTGTTGGAATGAATGTTAGTCTAATGTGGAACTCAGTTGGATTCTATCAAgtgagttggg ... ccattgacagATTGCGAAGTTAAGTATGATCCCTGTATCATGCCTATTGGAAGTTGTTCTC
EST: gi|13789409|gb|BG652000.1|BG652000
EST:     TTGTTGGAATGAATGTTAGTCTAATGTGGAACTCANTTGGATTCTATCAA                         ATTGCGAAGTTAAGT
genomic: TTGTTGGAATGAATGTTAGTCTAATGTGGAACTCAGTTGGATTCTATCAAgtgagttggg ... ccattgacagATTGCGAAGTTAAGT
EST: gi|192329849|gb|FK023353.1|FK023353
EST:     TTGTTGGAATGAATGTTAGTCTAATGTGGAACTCAGTTGGATTCTATCAA                         ATTGCGAAGTTAAGTATGATCCCTGTATCATGCCTATTGGAAGTTGTTCTC
genomic: TTGTTGGAATGAATGTTAGTCTAATGTGGAACTCAGTTGGATTCTATCAAgtgagttggg ... ccattgacagATTGCGAAGTTAAGTATGATCCCTGTATCATGCCTATTGGAAGTTGTTCTC