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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGACTACCATGGCTGTGATTTCTTTCCCGAGCGTTGGTTTGATTGCGTGGTTGTACTTCAAACTGATAACACCGTTTTGTATGACCGTTTGAGTCGGAGgtacagaagactcgtttctgttattgattattgattttgctactctattattgatttcattataaactttccctgtatatgtgacag

Basic information

species Glycine max
transcript GLYMA02G08350.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G08350.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os07g22950.1 (Oryza sativa), 5'ss of exon 2
TGGACTACCATGGCTGTGATTTCTTTCCCGAGCGTTGGTTTGATTGCGTGGTTGTACTTCAAACTGATAACACCGTTTTGTATGACCGTTTGAGTCGGAGgta---ca-gaagactcgtttctgttattgattattgattttgctactct--attattgatttcattataaactttccctgtatatgtgacag
| || |||||||| |||||||||||||| || |||||||||||    || ||||| || ||||| |||||| |  || || |||| || |||| | | |||||   || | |||   |              | |||   | || | | |  | |  | |||||    |||   |||  |  | |        
TAGATTACCATGGATGTGATTTCTTTCCAGAACGTTGGTTTGACCTTGTAGTTGTGCTCCAAACAGATAACTCAATTCTGCATGATCGCTTGACTAGCAGgtaattcatgcagaactgcacaatcacccacctgttggaatagccattatgaaatgcttatttctgactaagagttctattcacag-------

upper sequence: GLYMA02G08350.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os07g22950.2 (Oryza sativa), 5'ss of exon 2
TGGACTACCATGGCTGTGATTTCTTTCCCGAGCGTTGGTTTGATTGCGTGGTTGTACTTCAAACTGATAACACCGTTTTGTATGACCGTTTGAGTCGGAGgtacagaagactcgtttctgttattgattattgattttgctactctattattgatttcattataaactttccctgtatatgtgacag
                                                                          ||||   |||| | |  |     || | |   | |     |    ||   | |  || ||| |   | || |   |     ||  ||  |   | |   |||       ||||
--------------------------------------------------------------------------GTTTGCGATGAGCTTGAGGACGTGATGGAAGAAGgtggtatactagtagattaccatggatgtgatttcttt-ccagaacgttggtttgaccttgtagttgtgctccaaacag

upper sequence: GLYMA02G08350.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os07g22950.3 (Oryza sativa), 5'ss of exon 2
TGGACTACCATGGCTGTGATTTCTTTCCCGAGCGTTGGTTTGATTGCGTGGTTGTACTTCAAACTGATAACACCGTTTTGTATGACCGTTTGAGTCGGAGgta---ca-gaagactcgtttctgttattgattattgattttgctactct--attattgatttc--attataaactttccctgtatatgtgacag-------------------------------------------
| || |||||||| |||||||||||||| || |||||||||||    || ||||| || ||||| |||||| |  || || |||| || |||| | | |||||   || | |||   |              | |||   | || | | |  | |  | |||||  | ||  |  | |      | | || | |                                            
TAGATTACCATGGATGTGATTTCTTTCCAGAACGTTGGTTTGACCTTGTAGTTGTGCTCCAAACAGATAACTCAATTCTGCATGATCGCTTGACTAGCAGgtaattcatgcagaactgcacaatcacccacctgttggaatagccattatgaaatgcttatttctgactaagagttctattcacagaggttatatgggtgccaagctcacaaacaacatagaatgtgaaattttccag

upper sequence: GLYMA02G08350.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G60340.1 (Arabidopsis thaliana), 5'ss of exon 2
TGGACTACCATGGCTGTGATTTCTTTCCCGAGCGTTGGTTTGATTGCGTGGTTGTACTTCAAACTGATAACACCGTTTTGTATGACCGTTTGAGTCGGAGgtacagaagactcgtttctgttattgattattgattttgct---actctattattgatttcattataaactttccctgtatatgtgacag
||||||||||||||||||| ||||||||  |||| ||||||||| |||| || || |||| ||| || ||| ||||||||||||||||||| |     |||| ||||   |    | |    | ||    || | |||| |    || ||  |  | | | ||| |   || ||     |       |||
TGGACTACCATGGCTGTGACTTCTTTCCTCAGCGATGGTTTGATCGCGTTGTCGTGCTTCGAACCGAGAACTCCGTTTTGTATGACCGTTTAACGAATAGgt-cagatttccaaatccatcaaatgtagttttagtttgttttcgctttagcaaggttctgattgtgttctctcaac-caaccaaagcag

upper sequence: GLYMA02G08350.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0004g03280.t01 (Vitis vinifera), 5'ss of exon 2
TGGACTACCATGGCTGTGATTTCTTTCCCGAGCGTTGGTTTGATTGCGTGGTTGTACTTCAAACTGATAACACCGTTTTGTATGACCGTTTGAGTCGGAGgtacagaagactc-gtttctgttattga-ttattgattttgctactctatt------attgatttcattataaactttccctgtatatgtgacag
||||||||||||| ||||||||||| || ||||| ||||||||| | ||||| || |||||||| || ||| | || |||||||||||  |||||   |||||  || |  |  | |   |  ||    || ||| |||    |  |  ||      ||   |||   |  |||  ||   ||| | |||| |||
TGGACTACCATGGTTGTGATTTCTTCCCTGAGCGATGGTTTGATCGTGTGGTGGTGCTTCAAACCGACAACTCTGTGTTGTATGACCGCCTGAGTACAAGgtagtgatgtttttgctcagggcatcatcttcttggtttcttcatacccttccacccatcattttggctcaaaaaattgtttgt-tgtgtggcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298184959|gb|HO030172.1|HO030172
EST:     GTTGTACTTCAAACTGATAACACCGTTTTGTATGACCGTTTGAGTCGGAG                         GGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
genomic: GTTGTACTTCAAACTGATAACACCGTTTTGTATGACCGTTTGAGTCGGAGgtacagaaga ... tatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
EST: gi|298172882|gb|HO019866.1|HO019866
EST:     GTTGTACTTCAAACTGATAACACCGTTTTGTATGACCGTTTGAGTCGGAG                         GGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
genomic: GTTGTACTTCAAACTGATAACACCGTTTTGTATGACCGTTTGAGTCGGAGgtacagaaga ... tatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
EST: gi|298189345|gb|HO037748.1|HO037748
EST:     GTTGTACTTCAAACTGATAACACCGTTTTGTATGACCGTTTGAGTCGGAG                         GGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
genomic: GTTGTACTTCAAACTGATAACACCGTTTTGTATGACCGTTTGAGTCGGAGgtacagaaga ... tatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
EST: gi|298167337|gb|HO010776.1|HO010776
EST:     GTTGTACTTCAAACTGATAACACCGTTTTGTATGACCGTTTGAGTCGGAG                         GGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATG
genomic: GTTGTACTTCAAACTGATAACACCGTTTTGTATGACCGTTTGAGTCGGAGgtacagaaga ... tatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATG
EST: gi|298177390|gb|HO027171.1|HO027171
EST:     GTTGTACTTCAAACTGATAACACCGTTTTGTATGACCGTTTGAGTCGGAG                         GGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
genomic: GTTGTACTTCAAACTGATAACACCGTTTTGTATGACCGTTTGAGTCGGAGgtacagaaga ... tatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
EST: gi|7684843|gb|AW755491.1|AW755491
EST:     GTTGTACTTCAAACTGATAACACCGTTTTGTATGACCGTTTGAGTCGGAG                         GGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
genomic: GTTGTACTTCAAACTGATAACACCGTTTTGTATGACCGTTTGAGTCGGAGgtacagaaga ... tatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA