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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGTGGCCCATATAGATGATATTTTCAAGGACTTCACTTCCTATAAGGTTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGGgtaagacaagaataaacactttcagcagtacttattttttgctttctgtagtaagacaaatctatttgctttccttgttttcttgtggtatatctatgtt...

Basic information

species Glycine max
transcript GLYMA02G08170.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G08170.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G13570.1 (Arabidopsis thaliana), 5'ss of exon 3
TTATGTGGCCCATATAGATGATATTTTCAAGGACTTCACTTCCTATAAGGTTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGGgtaagacaagaataaacactttcagcagtacttattttttgctttctgtagtaagacaaatctatttgctttccttgttttcttgtggtatatctatgtt
||||||  | || || |||||||| || || ||||||||||| || |||  ||||||||| || ||||||||||| || || ||||| ||||||||||||||||||        | |   |   |   || |||  |||   | |  ||  |||  |  | |  |||  |||| ||||  | ||  |             
TTATGTTACTCACATTGATGATATCTTTAAAGACTTCACTTCTTACAAGTGTCGAGTTCCAGTCACTGGGGCAATTATCCTGGATGAGACATATGAAAGGgtaaga--------accctgtggggtgatatttaggtttacttattagt--taatgcttaccctttttgtttcattgtcattttcag-------------

upper sequence: GLYMA02G08170.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0019g04310.t01 (Vitis vinifera), 5'ss of exon 3
TTATGTGGCCCATATAGATGATATTTTCAAGGACTTCACTTCCTATAAGGTTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGGgtaaga-----caagaataaacactttcagcag--tact-tattttttgctttctgtagtaagacaaatctatttgctttccttgttttcttgtggtatatctatgtt
|||||| || || |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| ||| | |||||||| | |||| |||| ||          ||| ||  ||      ||  || | ||||||   | ||   | |  ||| |||||  |||  |  | || | || |        |        
TTATGTTGCTCACATAGATGATATTTTTAAGGACTTCACTTCCTACAAGGTTCGAGTACCTGTAACTGGGGCAATCATTTTGGATGAAACCTTTGAACGGgtgaggactcttgtcaatgaaagctagggaaagattattctattttggtcctttcttggagagaaaaatcccttttgtagcattttcttttaacaaccaa--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192322569|gb|FK014690.1|FK014690
EST:     TTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGG                         TGCTTGCTAGTGAAGGGATGGAAAGGTCCAAGCTGGAGCTTCCCTCGTGGA
genomic: TTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGGgtaagacaag ... cactggacagTGCTTGCTAGTGAAGGGATGGAAAGGTTCAAGCTGGAGCTTCCCTCGTGGA
EST: gi|16106178|gb|BI893918.1|BI893918
EST:     TTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGG                         TGCTTGCTAGTGAAGGGATGGAAAGGTTCAAGCTGGAGCTTCCCTCGTGGA
genomic: TTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGGgtaagacaag ... cactggacagTGCTTGCTAGTGAAGGGATGGAAAGGTTCAAGCTGGAGCTTCCCTCGTGGA
EST: gi|151403573|gb|EV273383.1|EV273383
EST:     TTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGG                         TGCTTGCTAGTGAAGGGATGGAAAGGTTCAAGCTGGAGCTTCCCTCGTGGA
genomic: TTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGGgtaagacaag ... cactggacagTGCTTGCTAGTGAAGGGATGGAAAGGTTCAAGCTGGAGCTTCCCTCGTGGA
EST: gi|13789427|gb|BG652018.1|BG652018
EST:     TTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGG                         TGCTTGCTAGTGAAGGGATGGAAAGGTTCAAGCTGGAGCTTCCCTCGTGGA
genomic: TTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGGgtaagacaag ... cactggacagTGCTTGCTAGTGAAGGGATGGAAAGGTTCAAGCTGGAGCTTCCCTCGTGGA
EST: gi|193427446|gb|FK394858.1|FK394858
EST:     TTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGG                         TGCTTGCTAGTGAAGGGATGGAAAGGTACAAGTTGGAGTTTCCCTCGTGGA
genomic: TTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGGgtaagacaag ... cactggacagTGCTTGCTAGTGAAGGGATGGAAAGGTTCAAGCTGGAGCTTCCCTCGTGGA
EST: gi|5509566|gb|AI856124.1|AI856124
EST:     TTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGACAGG                         TGCTTGCTAGTGAAGGGATGGAAAGGTTCAAGCTGGAGCTTCCCTCGTGGA
genomic: TTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGGgtaagacaag ... cactggacagTGCTTGCTAGTGAAGGGATGGAAAGGTTCAAGCTGGAGCTTCCCTCGTGGA
EST: gi|151407825|gb|EV277640.1|EV277640
EST:     TTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGG                         TGCTTGCTAGTGAAGGGATGGAAAGGTTCAAGCTGGAGCTTCCCTCGTGGA
genomic: TTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGGgtaagacaag ... cactggacagTGCTTGCTAGTGAAGGGATGGAAAGGTTCAAGCTGGAGCTTCCCTCGTGGA