Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTACCTAGTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatacttaaaagtagtagctgaagttgcattttcttgccgattgagaatttataagctgttccaattttttgagggggtgggggagggtgaaaagggggaaggtgtgtcgtatcgatcttttaattttcattgacacactgcatgattgtttttctgaag

Basic information

species Glycine max
transcript GLYMA02G08010.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G08010.3 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0007g07290.t01 (Vitis vinifera), 5'ss of exon 3
AGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTACCTAGTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatacttaaaagtagtagctgaagttgcattttct-tgccgattgagaatttataagc----tgttccaattttttgagggggtgggggagggtgaaaagggggaaggtgtgtcgtatcgatcttttaattttcattgacacactgcatgattgtttttctgaag---
||| |||||| | ||||| |||||| | || |||||  || |||| ||||| ||||| |||||||| |||||||| || ||||| || || |||||||||||| | | || ||  |    |   |  ||   | || | |    | ||| | ||| ||  |    | || || ||  ||                 |  | | |   ||  ||| |   ||  | |  |  ||| |  || ||   ||| ||||   || || ||      
AGGTTTTTGGATTTGCTATTGCCATTTGGCCCGTCCATCTGCTTTGCCTAGCCCAACTGATTTGCATCTTTTCAAAGAGGGAATTCGCCCCCTATGGGAGgtaaacatttgaatctttctgtgcattttctttcttgtctaattaatgatattttttattccttatttttcacttcctttttattacataattatcttcagaagctaaaa-tgtatgaaattcaaccctagattgtggttaac---ctgaatgaaatttcttatgtgtcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7326526|gb|AW620324.1|AW620324
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCANAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|11687403|gb|BF595079.1|BF595079
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCANAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|9565360|gb|BE474869.1|BE474869
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|18041218|gb|BM309512.1|BM309512
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|15662834|gb|BI700205.1|BI700205
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|151412337|gb|EV282149.1|EV282149
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGTAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|17401526|gb|BM178308.1|BM178308
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|151403487|gb|EV273297.1|EV273297
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTACTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|298194936|gb|HO043408.1|HO043408
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|298193383|gb|HO033817.1|HO033817
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|17023729|gb|BM094763.1|BM094763
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|15203071|gb|BI425839.1|BI425839
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|298187089|gb|HO034238.1|HO034238
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGATT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|298189597|gb|HO038000.1|HO038000
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTTTACGATTCAAAAA
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAA
EST: gi|254324094|gb|GR840519.1|GR840519
EST:     GTCCAACAGATTTGCA-CTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|298183125|gb|HO028388.1|HO028388
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|298176584|gb|HO023171.1|HO023171
EST:     GTCCAACAGATTTACACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|209726130|gb|BW675305.1|BW675305
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|193699254|gb|FK637679.1|FK637679
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAGGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATAACGAATTCAAAAAAG
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATA-CGA-TTCAAAAA-G
EST: gi|254326145|gb|GR840737.1|GR840737
EST:     GTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|120495839|gb|EH224006.1|EH224006
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|192316836|gb|FK006077.1|FK006077
EST:     GTCCAACAGACTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|193385011|gb|FK351493.1|FK351493
EST:     CCAACAGATTTGCACC-TTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTTGGTAAATGGATTATACGATTCAAAAAGGT
genomic: CCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGG-TGGTAAATGGATTATACGATTCAAAAAGGT
EST: gi|120531368|gb|EH259501.1|EH259501
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|4313775|gb|AI460894.1|AI460894
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTTAACTGCA-TGGTGGTAAATGGATTATACGATTCAAANAGGT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCT-AACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGT
EST: gi|21995195|gb|BQ786723.1|BQ786723
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|298180864|gb|HO022303.1|HO022303
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|8284610|gb|BE022169.1|BE022169
EST:     AGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: AGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|120496028|gb|EH224195.1|EH224195
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|192316837|gb|FK006078.1|FK006078
EST:     GTCCAACAGACTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|16996513|gb|BM085885.1|BM085885
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|298181032|gb|HO022471.1|HO022471
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|9899538|gb|BE608506.1|BE608506
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACTATTCATAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|254324772|gb|GR834197.1|GR834197
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|298164570|gb|HO014215.1|HO014215
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|213588418|gb|DB959738.1|DB959738
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|11687361|gb|BF595037.1|BF595037
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|14991130|gb|BI316803.1|BI316803
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|254324773|gb|GR834198.1|GR834198
EST:     AAGGAAATCCGTCCTCTAT-GGAG                         GACTCTGCTAACTGCAATGGTTGGTAAATGGATTATACGATTCAAAAAGGT
genomic: AAGG-AATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGG-TGGTAAATGGATTATACGATTCAAAAAGGT
EST: gi|193542266|gb|FK494040.1|FK494040
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAGGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|192323024|gb|FK016755.1|FK016755
EST:     CCAACAGATTTGCACCTTTTCAAGGAAGGAATCCCGTCCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: CCAACAGATTTGCACCTTTTCAAGGAAGGAAT-CCGT-CCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGG-T
EST: gi|254324093|gb|GR840518.1|GR840518
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|298168114|gb|HO013377.1|HO013377
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|19453543|gb|BM954953.1|BM954953
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|298176568|gb|HO023155.1|HO023155
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|298196163|gb|HO044554.1|HO044554
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|8285169|gb|BE022728.1|BE022728
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|6341462|gb|AW164286.1|AW164286
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|120496098|gb|EH224265.1|EH224265
EST:     GTCCAACAGATTTGCACCGTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|192322879|gb|FK014810.1|FK014810
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|298196429|gb|HO041172.1|HO041172
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|6482757|gb|AW201979.1|AW201979
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|298163689|gb|HO012422.1|HO012422
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|10848096|gb|BF070649.1|BF070649
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|298174013|gb|HO017349.1|HO017349
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTC
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|19452727|gb|BM954137.1|BM954137
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: gi|151410799|gb|EV280614.1|EV280614
EST:     GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG                         GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... ttttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTACCTAGTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatacttaaaagtagtagctgaagttgcattttcttgccgattgagaatttataagctgttccaattttttgagggggtgggggagggtgaaaagggggaaggtgtgtcgtatcgatcttttaattttcattgacacactgcatgattgtttttctgaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA