1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGATGTTCGTGATAAGGAACAAGTTATTTCAAGAATGAAAGCAGCCGTTGCCAGCAAGCAATTTGGTCAAGAAGATATCATATGTTCGCTTGTTGCTGATgtgagtatatcccaatttaccctattttaccatgataaaatgctttggtagcacaacactgtttacattgtgacctctgtttggaaaatatag
species | Glycine max |
transcript | GLYMA02G07910.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCAGCAAGCAATTTGGTCAAGAAGATATCATATGTTCGCTTGTTGCTGAT GCATGCATCCAAGTGTGCCCCAAAA-CCCTGCAAACTTTAATGTGGACAACEST: gi|209700023|gb|BW656204.1|BW656204
genomic: CCAGCAAGCAATTTGGTCAAGAAGATATCATATGTTCGCTTGTTGCTGATgtgagtatat ... gaaaatatagGCATGCATCCAAGTGTGCCCCAAAAACCCTGCAAACTTTAATGTGGACAAC
EST: CCAGCAAGCAATTTGGTCAAGAAGATATCATATGTTCGCTTGTTGCTGAT GCATGCATCCAAGTGTGCCCCAAAAACCCTGCAAACTTTAATGTGGACAACEST: gi|16997151|gb|BM086523.1|BM086523
genomic: CCAGCAAGCAATTTGGTCAAGAAGATATCATATGTTCGCTTGTTGCTGATgtgagtatat ... gaaaatatagGCATGCATCCAAGTGTGCCCCAAAAACCCTGCAAACTTTAATGTGGACAAC
EST: CCAGCAAGCAATTTGGTCAAGAAGATATCATATGTTCGCTTGTTGCTGAT GCATGCATCCAAGTGTGCCCCAAAAACCCTGCAAACTTTAATGTGGACAACEST: gi|209728113|gb|BW655348.1|BW655348
genomic: CCAGCAAGCAATTTGGTCAAGAAGATATCATATGTTCGCTTGTTGCTGATgtgagtatat ... gaaaatatagGCATGCATCCAAGTGTGCCCCAAAAACCCTGCAAACTTTAATGTGGACAAC
EST: CCAGCAAGCAATTTGGTCAAGAAGATATCATATGTTCGCTTGTTGCTGAT GCATGCATCCAAGTGTGCCCCCAAAAACCCTGCAAACTTEST: gi|193548048|gb|FK505217.1|FK505217
genomic: CCAGCAAGCAATTTGGTCAAGAAGATATCATATGTTCGCTTGTTGCTGATgtgagtatat ... gaaaatatagGCATGCATCCAAGTGTGCCCC-AAAAACCCTGCAAACTT
EST: CCAGCAAGCAATTTGGTCAAGAAGATATCATATGTTCGCTTGTTGCTGAT GCATGCATCCAAGTGTGCCCCAAAAACCCTGCAAACTTTAATGTGGACAACEST: gi|26045600|gb|CA783137.1|CA783137
genomic: CCAGCAAGCAATTTGGTCAAGAAGATATCATATGTTCGCTTGTTGCTGATgtgagtatat ... gaaaatatagGCATGCATCCAAGTGTGCCCCAAAAACCCTGCAAACTTTAATGTGGACAAC
EST: CCAGCAAGCAATTTGGTCAAGAAGATATCATATGTTCGCTTGTTGCTGAT GCATGCATCCAAGTGTGCCCCAAAAACCCTGCAAACTTTAATGTGGACAACEST: gi|298187418|gb|HO034567.1|HO034567
genomic: CCAGCAAGCAATTTGGTCAAGAAGATATCATATGTTCGCTTGTTGCTGATgtgagtatat ... gaaaatatagGCATGCATCCAAGTGTGCCCCAAAAACCCTGCAAACTTTAATGTGGACAAC
EST: CCAGCAAGCAATTTGGTCAAGAAGATATCATATGTTCGCTTGTTGCTGAT GCATGCATCCAAGTGTGCCCCAAAAACCCTGCAAACTTTAATGTGGACAAC
genomic: CCAGCAAGCAATTTGGTCAAGAAGATATCATATGTTCGCTTGTTGCTGATgtgagtatat ... gaaaatatagGCATGCATCCAAGTGTGCCCCAAAAACCCTGCAAACTTTAATGTGGACAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATGTTCGTGATAAGGAACAAGTTATTTCAAGAATGAAAGCAGCCGTTGCCAGCAAGCAATTTGGTCAAGAAGATATCATATGTTCGCTTGTTGCTGATgtgagtatatcccaatttaccctattttaccatgataaaatgctttggtagcacaacactgtttacattgtgacctctgtttggaaaatatag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT