1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGAAATGGAAGATGATGAGAATTTCCAGGAGGAGGATCAAGAGCACCATGTTGATCTGGTTGTTCCCTTTAAAAAATCAGTCAAGCAAATCATGCGTGAGgttagattttatcttattctattcttggttgagtaaaatttatatcctgcaatatattgaccatttatgaaattgctttgagtgatttgttatttagtat...
species | Glycine max |
transcript | GLYMA02G07390.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGATCTGGTTGTTCCCTTTAAAAAATCAGTCAAGCAAATCATGCGTGAG ACAACCGTTGTGACCACTAGAAGGATTTTAGAAAGAATTGTTGTGCATTATEST: gi|298178630|gb|HO024365.1|HO024365
genomic: TTGATCTGGTTGTTCCCTTTAAAAAATCAGTCAAGCAAATCATGCGTGAGgttagatttt ... gccatcacagACAACCGTTGTGACCACTAGAAGGATTTTAGAAAGAATTGTTGTGCATTAT
EST: TTGATCTGGTTGTTCCCTTTAAAAAATCAGTCAAGCAAATCATGCGTGAG ACAACCGTTGTGACCACTAGAAGGATTTTAGAAAGAATTGTTGTGCATTATEST: gi|192324090|gb|FK019381.1|FK019381
genomic: TTGATCTGGTTGTTCCCTTTAAAAAATCAGTCAAGCAAATCATGCGTGAGgttagatttt ... gccatcacagACAACCGTTGTGACCACTAGAAGGATTTTAGAAAGAATTGTTGTGCATTAT
EST: TTGATCTGGTTGTTCCCTTTAAAAAATCAGTCAAGCAAATCATGCGTGAG ACAACCGTTGTGACCACTAGAAAGATTTTAGAAAGAATTGTTGTGCATTAT
genomic: TTGATCTGGTTGTTCCCTTTAAAAAATCAGTCAAGCAAATCATGCGTGAGgttagatttt ... gccatcacagACAACCGTTGTGACCACTAGAAGGATTTTAGAAAGAATTGTTGTGCATTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAATGGAAGATGATGAGAATTTCCAGGAGGAGGATCAAGAGCACCATGTTGATCTGGTTGTTCCCTTTAAAAAATCAGTCAAGCAAATCATGCGTGAGgttagattttatcttattctattcttggttgagtaaaatttatatcctgcaatatattgaccatttatgaaattgctttgagtgatttgttatttagtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA