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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTGTTTTGGGAGACCAATTGCGAGTGCTCCTGATGCATGGTTTGATGTAGTCGAACGCCACTCGAATGATAACAACAAGACACTGAAgtataatcctctgtttatttttcagacctataattatgttttattatttttttatttttttctctgagataggtggctgggacgatttgttttctgagat...

Basic information

species Glycine max
transcript GLYMA02G07250.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G07250.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G23670.1 (Arabidopsis thaliana), 5'ss of exon 3
GACTGTTTTGGGAGACCAATTGCGAGTGCTCCTGATGCATGGTTTGATGTAGTCGAACGCCACTCGAATGATAACAACAAGACACTGAAgtataatcctctgtttat-ttttcagacctataattatgttttattatttttttatttttttctctgagataggtgg-ctgggacgattt-----gttttctgagat-----------------------------------------------------------------------------------------
|| |||||||   |||| ||  ||||||| |||||||| ||||||||||| || || ||| |||| ||||| ||||||||||| || ||||       |||  || | ||||   | |  || |  |   || ||   || |  |       | ||| |  | ||   | | | | ||      || || | | ||                                                                                         
GATTGTTTTGAACGACCTATATCGAGTGCACCTGATGCTTGGTTTGATGTGGTTGAGCGCTACTCTAATGACAACAACAAGACGCTTAAgtgagtctgtctacttgtgtttttctatcagtagtcgtagcttctttgattctgttgggagaatatgaaaatgctgaattcgaatggttgatacagtcttgtaaaattgtcccattcaagtttaattaggggaagatttgaattctaaattaagaaggttgctgagtaaacctttgttggtgttgactctgtgcag

upper sequence: GLYMA02G07250.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0068g01300.t01 (Vitis vinifera), 5'ss of exon 3
GACTGTTTTGGGAGACCAATTGCGAGTGCTCCTGATGCATGGTTTGATGTAGTCGAACGCCACTCGAATGATAACAACAAGACACTGAAgtataatcctctgtttatttttcagacctataattatgttttattatttttttatttttttctctgagataggtggctgggacgatttgttttctgagat
||||| ||||| ||||||||  | |||||||||||||| ||||| |||||  |||||||  |||| ||||| || ||||||||| |||||||   | | || |||   |   | || ||   || | || ||     | |||| |||| |||      | | ||           || | |  | |  |
GACTGCTTTGGAAGACCAATATCAAGTGCTCCTGATGCTTGGTTAGATGTGATCGAACGTAACTCCAATGACAATAACAAGACATTGAAgtaaggttccctttttgcatcagatacttagccttgtcttataaggagtatttagttttctcttatttttggttgaagttagtttcttatctgtttattt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19934798|gb|BQ079828.1|BQ079828
EST:     TGGTTTGATGTAGTCGAACGCCACTCGAATGATAACAACAAGACACTGAA                         ACGGACTGATAAAATAAGTAGATGCCTTAATTTGGGATCATACAACTATCT
genomic: TGGTTTGATGTAGTCGAACGCCACTCGAATGATAACAACAAGACACTGAAgtataatcct ... cccaatgcagACGGACTGATAAAATAAGTAGATGCCTTAATTTGGGATCATACAACTATCT
EST: gi|7147563|gb|AW509485.1|AW509485
EST:     TGGTTTGATGTAGTCGAACGCCACTCGAATGATAACAACAAGACACTGAA                         ACGGACTGATAAAATAAGTAGATGCCTTAATTTGGGATCATACAACTATCT
genomic: TGGTTTGATGTAGTCGAACGCCACTCGAATGATAACAACAAGACACTGAAgtataatcct ... cccaatgcagACGGACTGATAAAATAAGTAGATGCCTTAATTTGGGATCATACAACTATCT
EST: gi|213615414|gb|DB965665.1|DB965665
EST:     TGGTTTGATGTAGTCGAACGCCACTCGAATGATAACAACAAGACACTGAA                         ACGGACTGATAAAATAAGTAGATGCCTTAATTTGGGATCATACAACTATCT
genomic: TGGTTTGATGTAGTCGAACGCCACTCGAATGATAACAACAAGACACTGAAgtataatcct ... cccaatgcagACGGACTGATAAAATAAGTAGATGCCTTAATTTGGGATCATACAACTATCT
EST: gi|10237694|gb|BE806582.1|BE806582
EST:     TGGTTTGATGTAGTCGAACGCCACTCGAATGATAACAACAAGACACTGAA                         ACGGACTGATAAAATAAGTAGATGCCTTAATTTGGGATCATACAACTATCT
genomic: TGGTTTGATGTAGTCGAACGCCACTCGAATGATAACAACAAGACACTGAAgtataatcct ... cccaatgcagACGGACTGATAAAATAAGTAGATGCCTTAATTTGGGATCATACAACTATCT