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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTACAGGCCTCCTCGATGTTCTCACTGCTCAATTTGTAATAACTGTGTGGAACGGTTTGATCACCATTGTCCCTGGGTTGGGCAGTGCATTGGGCTGgtaagttagaccttttgtttgacaaaattgatttttaattgtgaatctgctctgcagaatttccaatgctaggcagaaagactgacacggtatctggggt...

Basic information

species Glycine max
transcript GLYMA02G07190.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G07190.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os09g33450.2 (Oryza sativa), 5'ss of exon 4
GCTCTACAGGCCTCCTCGATGTTCTCACTGCTCAATTTGTAATAACTGTGTGGAACGGTTTGATCACCATTGTCCCTGGGTTGGGCAGTGCATTGGGCTGgtaagttagaccttttgtttgacaaaattgatttttaattgtgaatctgctctgcagaatttccaatgctaggcagaaagactgacacggtatctggggt------------------------------------------------------------------------------------------
||| ||| |||| |||||||| |||||||| || || ||||||||||||||||| || |||||||| || || || ||||||||||| ||||||||   |||||||       | |||| ||     |    | |   |  || |  |    || ||| |||   ||  |  || |       | |    || ||   ||                                                                                          
GCTGTACCGGCCACCTCGATGCTCTCACTGTTCTATATGTAATAACTGTGTGGAGCGTTTTGATCATCACTGCCCTTGGGTTGGGCAATGCATTGGAAGGgtaagtatcttgatgtgttggaaggtttaagatatccttattgcaattagcttgaaga-tttgatatcatgtgcggtgttgtggtctgtatacctcttgttggattttctatattagatattagtagattgttagttactactttaaagttttaacaagtcagcgctaattatcaacttatctgctgcag

upper sequence: GLYMA02G07190.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os08g42370.3 (Oryza sativa), 5'ss of exon 3
GCTCTACAGGCCTCCTCGATGTTCTCACTGCTCAATTTGTAATAACTGTGTGGAACGGTTTGATCACCATTGTCCCTGGGTTGGGCAGTGCATTGGGCTGgtaagttagaccttttgtttgacaaaattg-----atttttaat--------------tgtgaatctgctctgcagaat--ttccaatgctaggcagaaagactga--cacggtatctggggt--------------------------
||| ||| |||| |||||||| || ||||| || || || || ||||||||||||||||||||||| || ||||| |||||||| || ||||| || || ||||||   |  |||| |    ||    ||     ||  |||                || | || || |  |    ||  ||||| ||||   ||   ||       ||    | || | |                           
GCTTTACCGGCCACCTCGATGCTCACACTGTTCGATATGCAACAACTGTGTGGAACGGTTTGATCATCACTGTCCATGGGTTGGCCAATGCATAGGACTTgtaagtatcatgtttt-tccagcagttctgtacctatccttaccgtaggaaagacatgtgcgtatttgtttggagttattcttccagtgcttttcattgagctctcttcaaatcaacttgagcctaatcataaagcatatttggtgcag

upper sequence: GLYMA02G07190.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G068657_T02 (Zea mays), 5'ss of exon 3
GCTCTACAGGCCTCCTCGATGTTCTCACTGCTCAATTTGTAATAACTGTGTGGAACGGTTTGATCACCATTGTCCCTGGGTTGGGCAGTGCATTGGGCTGgtaagttagacc------ttttgtttgacaaaattgatttttaattg-tgaatctgctctgcagaatttccaatgctaggcaga---------aagactgacacggtatctggggt-------------------------------
| | ||| | || |||||||| || ||||| || ||||| |||||||||||||||||||||||||| || ||||| ||||| || |||||||| || ||||||||||| ||        |  || |  || |   |   |   |||  |  |  || | |  |||  | | | | || || | |         ||   ||||    | |||    |                               
GTTGTACCGACCACCTCGATGCTCACACTGTTCCATTTGCAATAACTGTGTGGAACGGTTTGATCATCACTGTCCATGGGTCGGCCAGTGCATAGGACTGgtaagttacacaagattactaggtgtttcataggcgtcctcatattacttgaattgatatttagagctactatttctgggtacattttttttgaatgttgactaactttctattttgttaagactgaccatcaatgtatttgtgcag

upper sequence: GLYMA02G07190.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM5G821611_T01 (Zea mays), 5'ss of exon 3
GCTCTACAGGCCTCCTCGATGTTCTCACTGCTCAATTTGTAATAACTGTGTGGAACGGTTTGATCACCATTGTCCCTGGGTTGGGCAGTGCATTGGGCTGgtaagtta---gaccttttgtttgacaaaattgatttttaattgtgaatctgctctgcagaatttccaatgctaggcagaaagactga--cacggtatctggggt-----------------------------------------------------------------------
||| ||| | || |||||||| || ||||| || ||||| |||||||||||||||||||||||||| || ||||| ||||| || |||||||| || |||||||||||   ||  |  |   ||    ||| |  |  | ||  |  | |      |  |       |    |     ||      ||   ||  | ||||||                                                                         
GCTGTACCGACCACCTCGATGCTCACACTGTTCCATTTGCAATAACTGTGTGGAACGGTTTGATCATCACTGTCCATGGGTCGGCCAGTGCATAGGACTGgtaagttactcgagatgctagctgttttaatagcgtccttatattagaacaatcgcggtgtgcacatacacttgaattgatgtttggaggtactctttctgggtagattttcatttttttaagttgttgactaactttctattctgttaagcctgatcatcaacatatttgtgcag

upper sequence: GLYMA02G07190.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G179002_T03 (Zea mays), 5'ss of exon 3
GCTCTACAGGCCTCCTCGATGTTCTCACTGCTCAATTTGTAATAACTGTGTGGAACGGTTTGATCACCATTGTCCCTGGGTTGGGCAGTGCATTGGGCTGgtaagttagaccttttgtttgacaaaattgatttttaattgtgaatctgctctgcagaatt-tccaatgctaggcagaaagactgacacggtatctggggt
||| ||||| || |||||||| || ||||| || || ||||||||||||||||| || ||||||||||| || || ||||||||||||||||| ||  ||||||||| ||   |   ||  | |   | |  || |  |||  ||| |||  | |||  |  ||   |     | ||    |     |   |     | | 
GCTGTACAGACCACCTCGATGCTCACACTGTTCTATCTGTAATAACTGTGTGGAGCGCTTTGATCACCACTGCCCTTGGGTTGGGCAGTGCATAGGATTGgtaagtttgagaataacttgaatagtttagcattgttgttgc-aatatgcattacagtttaatcttgtatccagtagtgttatcagaagattgctcagcgg

upper sequence: GLYMA02G07190.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM5G868588_T01 (Zea mays), 5'ss of exon 3
GCTCTACAGGCCTCCTCGATGTTCTCACTGCTCAATTTGTAATAACTGTGTGGAACGGTTTGATCACCATTGTCCCTGGGTTGGGCAGTGCATTGGGCTGgtaagttagaccttttgtttgacaaaattgatttttaattgtgaatctgctctgcagaatttccaatgctaggcagaaagactgacacggtatctggggt---
||| ||||| || |||||||| || |||||||| || ||||||||||||||||| || ||||| ||||| || || |||||||| || ||||| ||  ||||||||| |    |   ||  | |   |     | |  |||  ||| |||  | ||||  ||  | |  ||  ||| |    | |||    | |     |   
GCTGTACAGACCACCTCGATGCTCACACTGCTCTATCTGTAATAACTGTGTGGAGCGCTTTGACCACCACTGCCCTTGGGTTGGCCAATGCATAGGATTGgtaagtttgggaataccttgaatagtttcacagtgttgttgc-aatatgcattacaga--ttaaacttgtatccagtagtgttaacagaagagcactcatcag

upper sequence: GLYMA02G07190.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0068g01530.t01 (Vitis vinifera), 5'ss of exon 3
GCTCTACAGGCCTCCTCGATGTTCTCACTGCTCAATTTGTAATAACTGTGTGGAACGGTTTGATCACCATTGTCCCTGGGTTGGGCAGTGCATTGGGCTGgtaagttagaccttttgtttgacaaaattgatttttaattgtgaatctgctctgcagaatttccaatgctaggcagaaagactgacacggtatctggggt----
||| || || |||||||| || || ||||| || || ||||||||||| || ||||| ||||||||||| || || |||||||||||||| ||||| ||||||||  | |  || | || |||   ||    | ||   |||  | |   | | || |      | |   |   | |||     ||||  |   ||||||    
GCTTTATAGACCTCCTCGCTGCTCACACTGTTCCATATGTAATAACTGCGTCGAACGATTTGATCACCACTGCCCTTGGGTTGGGCAGTGTATTGGACTGgtaagagataaattattttagaccttatgacatattggatgtatagcctatatccaaaga----agtaacatttacaaaactcaacaccattcatggggtgggt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208050537|gb|GD844122.1|GD844122
EST:     TGGAACGGTTTGATCACCATTGTCCCTGGGTTGGGCAGTGCATTGGGCTG                         CGTAATTATCGCTTCTTCTTCATGTTTGTCTTCTCAACCACACTACTTTGT
genomic: TGGAACGGTTTGATCACCATTGTCCCTGGGTTGGGCAGTGCATTGGGCTGgtaagttaga ... tgttatgcagCGTAATTATCGCTTCTTCTTCATGTTTGTCTTCTCAACTACACTACTTTGT