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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTTGGAAGAGTCAGATGAAAGTGTTCACGTTAATATTAGGCACACAAAAGACTTTCTATTTGTGACTGTAAATACATTCTCTACCACATCATCAAAGgtaaaagatctttcctagggaactctgaaaaattaagatccttggtattggataataattgtaaccatttcttag

Basic information

species Glycine max
transcript GLYMA02G06940.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G06940.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G66960.1 (Arabidopsis thaliana), 5'ss of exon 4
GCTTTTGGAAGAGTCAGATGAAAGTGTTCACGTTAATATTAGGCACACAAAAGACTTTCTATTTGTGACTGTAAATACATTCTCTACCACATCATCAAAGgtaaaagatctttcctagggaactctgaaaaattaagatcct--tggtattggataat----aattgtaaccatttcttag------
||||   ||||| |  || |  | |||||||||||| || || || |||||||| || |  ||||| |||||||||||||||||||| || |  |||||||| |||| ||     |  |     || |||  || || |  |  || | ||| || |     |||  |||| | | ||  |      
GCTTCACGAAGAATTCGAGGGCAATGTTCACGTTAACATAAGACATACAAAAGATTTCCACTTTGTAACTGTAAATACATTCTCTACTACGTTTTCAAAGgtgaaagctccaaatt--gatctgctaaaagctttagtttttattgtttttgaatgacttgaaatcataacaagtactatgtcttag