Sequence
atgc intronic sequence ATGC exonic sequenceATATTTAGAAGCAAGAAACTGGAATGTTGATAAAGCTAAGAAAATGCTGGAGGAAACACTCAAGTGGAGGGCAACTTATAAGCCAGAGGAAATCCGTTGGgttagtttgatttaactggctttgatccctacacactcaattggtgatgccaaaaatgaaattgataatgaacatgacatacttgtaaccttgatccatg...
Basic information
species | Glycine max |
transcript | GLYMA02G06380.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G06380.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G443453_T01 (Zea mays), 5'ss of exon 5
ATATTTAGAAGCAAGAAACTGGAATGTTGATAAAGCTAAGAAAATGCTGGAGGAAACACTCAAGTGGAGGGCAACTTATAAGCCAGAGGAAATCCGTTGGgttagtttgatttaactggctt-tgatccctacac-actcaattggtgatgccaaaaatgaaattgataatgaacatgacatacttgtaaccttgatccatg
|||| | ||||| | ||||||||||||| ||| | | ||||||||||| |||| ||||||||||||||| |||| ||||||||||| || |||||||| | |||| | | || || |||| | || ||| ||| || | | || | | || || |||| | |||| | |
ATATCTGGAAGCCCGTAACTGGAATGTTGCTAAGTCGAGAAAAATGCTGGAAGAAAGTCTCAAGTGGAGGGCAGCTTACAAGCCAGAGGATATTCGTTGGgtaaatttgttcttccttttttgccatccatgcattgctctatttttgttcctctgaa--gcctagccaagtcactaaacatcatattaactgccttttag-
upper sequence: GLYMA02G06380.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G704053_T02 (Zea mays), 5'ss of exon 2
ATATTTAGAAGCAAGAAACTGGAATGTTGATAAAGCTAAGAAAATGCTGGAGGAAACACTCAAGTGGAGGGCAACTTATAAGCCAGAGGAAATCCGTTGGgttagtttgatttaactggctttgatccctacacactcaattggtgatgccaaaaatgaaattgataatgaacatgacatacttgtaaccttgatccatg
|||| | ||||| | ||||||||||| ||| | | |||||||| || |||| ||||| |||||||||||||||||||||||||| || || ||||| | | || | || | ||||| || || | || |||| ||||| | | | | |
ATATCTTGAAGCCCGGAACTGGAATGTCACTAAGTCGAGAAAAATGCTTGAAGAAAGTCTCAAATGGAGGGCAACTTATAAGCCAGAGGATATTCGCTGGgtaaatgtg-ctcaagttactttgctctctgaatcctggtcaagtga--ccaaacaccatgctaactgcctttcag------------------------
upper sequence: GLYMA02G06380.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0023g01720.t01 (Vitis vinifera), 5'ss of exon 4
ATATTTAGAAGCAAGAAACTGGAATGTTGATAAAGCTAAGAAAATGCTGGAGGAAACACTCAAGTGGAGGGCAACTTATAAGCCAGAGGAAATCCGTTGGgttagtttgatttaactggctttgatccctacacactcaattggtgatgccaaaaatgaaattgataatgaacatgacatacttgtaaccttgatccatg----
||| || ||||| | |||||||||||||| || || ||||||||| |||| || |||||||| ||||||||||| |||||||| ||||| || |||||||| |||| || ||| || ||| || | | | | | | | |||| ||| ||| ||| | || | | || |
ATACTTGGAAGCTCGGAACTGGAATGTTGACAAGGCAAAGAAAATGTTGGAAGAGACACTCAAATGGAGGGCAACCTATAAGCCTGAGGAGATTCGTTGGgtaagttgga--taaatgtgttt-atttttttttaataatgatgcaaaaatagaaatatttttgtcaattctt-tgattttttttccctccttttcttttaaatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|10846884|gb|BF069735.1|BF069735EST: AGGAAACACTCAAGTGGAGGGCAACTTATAAGCCAGAGGAAATCCGTTGG GCTGAAATAGCACATGAGGGTGAAACAGGCAAAGTCTCCAGAGCTAACTTC
genomic: AGGAAACACTCAAGTGGAGGGCAACTTATAAGCCAGAGGAAATCCGTTGGgttagtttga ... ttacatccagGCTGAAATAGCACATGAGGGTGAAACAGGCAAAGTCTCCAGAGCTAACTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATATTTAGAAGCAAGAAACTGGAATGTTGATAAAGCTAAGAAAATGCTGGAGGAAACACTCAAGTGGAGGGCAACTTATAAGCCAGAGGAAATCCGTTGGgttagtttgatttaactggctttgatccctacacactcaattggtgatgccaaaaatgaaattgataatgaacatgacatacttgtaaccttgatccatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgaaa