1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATCCGACGGAGGGCAACCCCATTTGGTCAACATTCAGTTTCAAAAGAAAGTTAGACTTCAGgtacgttgtaaataaataaaataaagttagagtttttaaatgttaatttttgtttttttggggttgtggcag
species | Glycine max |
transcript | GLYMA02G06190.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGCAACCCCATTTGGTCAACATTCAGTTTCAAAAGAAAGTTAGACCTCAG TTGATTGTGCTTGT-CGTG-ATTTCAAGCTTGATGAGA-TTACACGCEST: gi|58024926|gb|CX711667.1|CX711667
genomic: GGCAACCCCATTTGGTCAACATTCAGTTTCAAAAGAAAGTTAGACTTCAGgtacgttgta ... gttgtggcagTTGATTGTGCT-GTACGTGGATTTCAAGCTTGATGAGAGTTACACGC
EST: GTTTCAAAAGAAAGTTAGACTTCAG TTGATTGTGCTGTACGTGGATTTCAAGCTTGATGAGAGTTACACGCCGAGCEST: gi|6848381|gb|AW350671.1|AW350671
genomic: GTTTCAAAAGAAAGTTAGACTTCAGgtacgttgta ... gttgtggcagTTGATTGTGCTGTACGTGGATTTCAAGCTTGATGAGAGTTACACGCCGAGC
EST: GGCAACCCCATTTGGTCAACATTCAGTTTCAAAAGAAAGTTAGACTTCAG TTGATTGTGCTGTACGTGGATTTCAAGCTTGATGAGAGTTACACGCCGAGCEST: gi|6567209|gb|AW234820.1|AW234820
genomic: GGCAACCCCATTTGGTCAACATTCAGTTTCAAAAGAAAGTTAGACTTCAGgtacgttgta ... gttgtggcagTTGATTGTGCTGTACGTGGATTTCAAGCTTGATGAGAGTTACACGCCGAGC
EST: GGCAACCCCATTTGGTCAACATTCAGTTTCAAAAGAAAGTTAGACTTCAG TTGATTGTGCTGTACGTGGATTTCAAGCTTGATGAGAGTTACACGCCGAGCEST: gi|192310829|gb|FK000315.1|FK000315
genomic: GGCAACCCCATTTGGTCAACATTCAGTTTCAAAAGAAAGTTAGACTTCAGgtacgttgta ... gttgtggcagTTGATTGTGCTGTACGTGGATTTCAAGCTTGATGAGAGTTACACGCCGAGC
EST: GGCAACCCCATTTGGTCAACATTCAGTTTCAAAAGAAAGTTAGACTTCAG TTGATTGTGCTGTACGTGGATTTCAAGCTTGATGAGAGTTACACGCCGAGC
genomic: GGCAACCCCATTTGGTCAACATTCAGTTTCAAAAGAAAGTTAGACTTCAGgtacgttgta ... gttgtggcagTTGATTGTGCTGTACGTGGATTTCAAGCTTGATGAGAGTTACACGCCGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCCGACGGAGGGCAACCCCATTTGGTCAACATTCAGTTTCAAAAGAAAGTTAGACTTCAGgtacgttgtaaataaataaaataaagttagagtttttaaatgttaatttttgtttttttggggttgtggcag
- - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - AAGAAA